RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 WHAMMP3Q1A5X7 153 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 NFRKBQ6P4R8 1299 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 DAW1Q8N136 415 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 SLC35C1Q96A29 364 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 GDAP1L1Q96MZ0 367 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 PLEKHA4Q9H4M7 779 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 OLFML3Q9NRN5 406 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 PACSIN2Q9UNF0 486 aaPredicted RBP13.59□□□□□ -0.23
CIITA-212ENST00000618207 PDE2AO00408 941 aaPredicted RBP13.59□□□□□ -0.23
CIITA-212ENST00000618207 DHX15O43143 795 aaKnown RBP13.59□□□□□ -0.23
CIITA-212ENST00000618207 TACC1O75410 805 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 GAP43P17677 238 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 SOX10P56693 466 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 BACE1P56817 501 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 RNASE9P60153 205 aaKnown RBP13.59□□□□□ -0.23
CIITA-212ENST00000618207 ASIC2Q16515 512 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 HS2ST1Q7LGA3 356 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 FRMD5Q7Z6J6 570 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 EHBP1Q8NDI1 1231 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 FIZ1Q96SL8 496 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 GANQ9H2C0 597 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 GOLPH3Q9H4A6 298 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 AGO4Q9HCK5 861 aaKnown RBP13.59□□□□□ -0.23
CIITA-212ENST00000618207 POLR3GO15318 223 aaPredicted RBP13.59□□□□□ -0.23
CIITA-212ENST00000618207 SLC26A4O43511 780 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 EXOC3O60645 756 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 PTPRAP18433 802 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 MARSP56192 900 aaKnown RBP13.59□□□□□ -0.23
CIITA-212ENST00000618207 VSNL1P62760 191 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 C2orf54Q08AI8 447 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 ZNF280CQ8ND82 737 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 COG1Q8WTW3 980 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 GBP3Q9H0R5 595 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 FRMPD4Q14CM0 1322 aa13.58□□□□□ -0.23
CIITA-212ENST00000618207 SERPING1P05155 500 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 P4HBP07237 508 aaKnown RBP13.58□□□□□ -0.24
CIITA-212ENST00000618207 RPS12P25398 132 aaKnown RBP13.58□□□□□ -0.24
CIITA-212ENST00000618207 PTK2Q05397 1052 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 KIAA0753Q2KHM9 967 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 ARHGAP27Q6ZUM4 889 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 ZSWIM2Q8NEG5 633 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 RBM46Q8TBY0 533 aaKnown RBP13.58□□□□□ -0.24
CIITA-212ENST00000618207 IQCDQ96DY2 449 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 RIT2Q99578 217 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 PDCD2LQ9BRP1 358 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 KIFC3Q9BVG8 833 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 LRRN2O75325 713 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 ZRANB2O95218 330 aaKnown RBP eCLIP13.58□□□□□ -0.24
CIITA-212ENST00000618207 TBC1D8O95759 1140 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 FTCDO95954 541 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 KLRC1P26715 233 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 KCTD19Q17RG1 926 aaPredicted RBP13.58□□□□□ -0.24
CIITA-212ENST00000618207 ASTE1Q2TB18 679 aaPredicted RBP13.58□□□□□ -0.24
CIITA-212ENST00000618207 SCYL3Q8IZE3 742 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 TSGA10Q9BZW7 698 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 AGPAT3Q9NRZ7 376 aa13.58□□□□□ -0.24
CIITA-212ENST00000618207 TMCO5BA8MYB1 307 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 YWHABP31946 246 aaKnown RBP13.57□□□□□ -0.24
CIITA-212ENST00000618207 PSMC2P35998 433 aaKnown RBP13.57□□□□□ -0.24
CIITA-212ENST00000618207 QARSP47897 775 aaKnown RBP13.57□□□□□ -0.24
CIITA-212ENST00000618207 RARRES1P49788 294 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 PEX3P56589 373 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 MAPK7Q13164 816 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 LONRF2Q1L5Z9 754 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 XKR9Q5GH70 373 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 KLHDC7AQ5VTJ3 777 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 PCNX4Q63HM2 1172 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 DCAF15Q66K64 600 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 GBP6Q6ZN66 633 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 TRIM58Q8NG06 486 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 ABCB6Q9NP58 842 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 ZCCHC17Q9NP64 241 aaKnown RBP13.57□□□□□ -0.24
CIITA-212ENST00000618207 PXMP2Q9NR77 195 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 UBIAD1Q9Y5Z9 338 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 GOLGA8IPA6NC78 632 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 GOLGA8JA6NMD2 632 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 FZD9O00144 591 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 BACH1O14867 736 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 SLC16A4O15374 487 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 GFPT2O94808 682 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 CCNE2O96020 404 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 PLA2G4AP47712 749 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 ARHGAP44Q17R89 818 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 BMT2Q1RMZ1 405 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 CBWD6Q4V339 395 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 CBWD3Q5JTY5 395 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 CBWD5Q5RIA9 395 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 FAM102BQ5T8I3 360 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 PAPD7Q5XG87 772 aaKnown RBP13.57□□□□□ -0.24
CIITA-212ENST00000618207 FOXR2Q6PJQ5 311 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 B3GNT9Q6UX72 402 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 ZC3H3Q8IXZ2 948 aaKnown RBP13.57□□□□□ -0.24
CIITA-212ENST00000618207 FRMD4BQ9Y2L6 1034 aa13.57□□□□□ -0.24
CIITA-212ENST00000618207 CCDC169A6NNP5 214 aa13.56□□□□□ -0.24
CIITA-212ENST00000618207 PPP1R12BO60237 982 aaPredicted RBP13.56□□□□□ -0.24
CIITA-212ENST00000618207 HOXA7P31268 230 aaPredicted RBP13.56□□□□□ -0.24
CIITA-212ENST00000618207 DLG4P78352 724 aa13.56□□□□□ -0.24
CIITA-212ENST00000618207 ZNF571Q7Z3V5 609 aaPredicted RBP13.56□□□□□ -0.24
CIITA-212ENST00000618207 GSPT2Q8IYD1 628 aaKnown RBP13.56□□□□□ -0.24
CIITA-212ENST00000618207 ELMO3Q96BJ8 720 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms