RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 LRRC27Q9C0I9 530 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 TMX2Q9Y320 296 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 KDM3AQ9Y4C1 1321 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 ABCB4P21439 1286 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 GSCP56915 257 aaPredicted RBP15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 GUCY1A3Q02108 690 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 FAM178BQ8IXR5 827 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 KIRREL3Q8IZU9 778 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 MAGEF1Q9HAY2 307 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 ITIH6Q6UXX5 1313 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 ARHGEF35A5YM69 484 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 CCDC169A6NNP5 214 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 AKAP3O75969 853 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 SLITRK3O94933 977 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 CEP55Q53EZ4 464 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 PPP1R18Q6NYC8 613 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 ADAT2Q7Z6V5 191 aaKnown RBP15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 SULF1Q8IWU6 871 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 TAAR1Q96RJ0 339 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 COL20A1Q9P218 1284 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 HMGCS2P54868 508 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 SLC12A3P55017 1021 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 SFMBT2Q5VUG0 894 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 CCDC127Q96BQ5 260 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 DNAJC7Q99615 494 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 LXNQ9BS40 222 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 UNC45AQ9H3U1 944 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 SALL4Q9UJQ4 1053 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 KRT14P02533 472 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 XRCC5P13010 732 aaKnown RBP15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 SEC24CP53992 1094 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 CKAP4Q07065 602 aaKnown RBP15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 KIAA0753Q2KHM9 967 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 PLA2G4FQ68DD2 849 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 MIER3Q7Z3K6 550 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 TSEN2Q8NCE0 465 aaKnown RBP15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 NUP58Q9BVL2 599 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 TMOD4Q9NZQ9 345 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 HERC5Q9UII4 1024 aaKnown RBP15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 SBF2Q86WG5 1849 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 BRWD3Q6RI45 1802 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 GRIN2DO15399 1336 aa15.78■□□□□ 0.12
SHROOM1-208ENST00000617339 A0A1W2PQC6 194 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 FOSP01100 380 aaPredicted RBP15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 RPA1P27694 616 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 HDLBPQ00341 1268 aaKnown RBP15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 LRRC63Q05C16 580 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 EHHADHQ08426 723 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 RINT1Q6NUQ1 792 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 N4BP2L2Q92802 583 aaPredicted RBP15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 MTMR8Q96EF0 704 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 GMCL1Q96IK5 515 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 DEFB129Q9H1M3 183 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 HAUS4Q9H6D7 363 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 DONSONQ9NYP3 566 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 KCNA3P22001 575 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 SREBF1P36956 1147 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 IFT88Q13099 833 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 AP3B2Q13367 1082 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 PPP2R5AQ15172 486 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 ZNF668Q96K58 619 aaPredicted RBP15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 EHMT1Q9H9B1 1298 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 MYO1AQ9UBC5 1043 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 MRPL11Q9Y3B7 192 aaKnown RBP15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 COL24A1Q17RW2 1714 aa15.77■□□□□ 0.12
SHROOM1-208ENST00000617339 CLGNO14967 610 aa15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 EXOC3O60645 756 aa15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 SHOX2O60902 331 aaPredicted RBP15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 GFPT2O94808 682 aa15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 ASNSP08243 561 aa15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 VIL1P09327 827 aaKnown RBP15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 HARSP12081 509 aaKnown RBP15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 KNOP1Q1ED39 458 aaKnown RBP15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 SPDYE2Q495Y8 402 aa15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 IFT81Q8WYA0 676 aa15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 KCNH7Q9NS40 1196 aa15.77■□□□□ 0.11
SHROOM1-208ENST00000617339 HSF2BPO75031 334 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 ATG4CQ96DT6 458 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 SCLT1Q96NL6 688 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 SLC24A3Q9HC58 644 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 HACL1Q9UJ83 578 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 SIK3Q9Y2K2 1263 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 TELO2Q9Y4R8 837 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 NR3C1P04150 777 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 HPDP32754 393 aaPredicted RBP15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 E2F5Q15329 346 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 TTMPQ5BVD1 217 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 OTOP1Q7RTM1 612 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 ZSWIM2Q8NEG5 633 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 GGA3Q9NZ52 723 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 FAM184BQ9ULE4 1060 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 RIPK3Q9Y572 518 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 A0A087X0T9 212 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 ESYT3A0FGR9 886 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 FAM228BP0C875 321 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 ITGB5P18084 799 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 GUCY2FP51841 1108 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 SPIRE1Q08AE8 756 aa15.76■□□□□ 0.11
SHROOM1-208ENST00000617339 EXOC3L4Q17RC7 722 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms