RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SENP2Q9HC62 589 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 PRPSAP2O60256 369 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 CTDNEP1O95476 244 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 TRIM49P0CI25 452 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 TRIM49CP0CI26 452 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 ARL4AP40617 200 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 MTMR1Q13613 665 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 MMEL1Q495T6 779 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 RNF207Q6ZRF8 634 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 ARHGAP27Q6ZUM4 889 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 DPP9Q86TI2 863 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 TRIM42Q8IWZ5 723 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 CEP120Q8N960 986 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 NSUN4Q96CB9 384 aaKnown RBP15.05■□□□□ 0
CPSF1-212ENST00000616140 GINM1Q9NU53 330 aa15.05■□□□□ 0
CPSF1-212ENST00000616140 LIMA1Q9UHB6 759 aaKnown RBP15.05■□□□□ 0
CPSF1-212ENST00000616140 TULP4Q9NRJ4 1543 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 MED7O43513 233 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 GBP7Q8N8V2 638 aaPredicted RBP15.05■□□□□ -0
CPSF1-212ENST00000616140 RPS6KC1Q96S38 1066 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 PPP1R16BQ96T49 567 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 PITPNM3Q9BZ71 974 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 SLC38A10Q9HBR0 1119 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 UNC13BO14795 1591 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 LUC7L3O95232 432 aaKnown RBP15.05■□□□□ -0
CPSF1-212ENST00000616140 MAGEA9P43362 315 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 PRELPP51888 382 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 ORC2Q13416 577 aaPredicted RBP15.05■□□□□ -0
CPSF1-212ENST00000616140 NAALADL2Q58DX5 795 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 ADGRF4Q8IZF3 695 aa15.05■□□□□ -0
CPSF1-212ENST00000616140 SLC16A4O15374 487 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 AKR1B1P15121 316 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 RCSD1Q6JBY9 416 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 SRRM1Q8IYB3 904 aaKnown RBP15.04■□□□□ -0
CPSF1-212ENST00000616140 C11orf70Q9BRQ4 267 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 MLXIPLQ9NP71 852 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 SCINQ9Y6U3 715 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 KIF3CO14782 793 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 MAP7Q14244 749 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 Q3C1V9 767 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 PASD1Q8IV76 773 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 ADSSL1Q8N142 457 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 VCX3AQ9NNX9 186 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 SAYSD1Q9NPB0 183 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 TXLNGQ9NUQ3 528 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 KCNQ2O43526 872 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 ZBED1O96006 694 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 FTLP02792 175 aaPredicted RBP15.04■□□□□ -0
CPSF1-212ENST00000616140 MARK3P27448 753 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 CNGA1P29973 690 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 ABCD1P33897 745 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 CDO1Q16878 200 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 PODNQ7Z5L7 613 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 TC2NQ8N9U0 490 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 PHF20Q9BVI0 1012 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 ZWILCHQ9H900 591 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 PALM3A6NDB9 673 aaPredicted RBP15.04■□□□□ -0
CPSF1-212ENST00000616140 STK4Q13043 487 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 SUPT20HL1Q3ZLR7 823 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 DPY19L2Q6NUT2 758 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 RAD9BQ6WBX8 426 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 MCPH1Q8NEM0 835 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 AGPAT5Q9NUQ2 364 aa15.04■□□□□ -0
CPSF1-212ENST00000616140 TOM1L1O75674 476 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 HDLBPQ00341 1268 aaKnown RBP15.03■□□□□ -0
CPSF1-212ENST00000616140 PPP1R18Q6NYC8 613 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 ARHGEF1Q92888 912 aaKnown RBP15.03■□□□□ -0
CPSF1-212ENST00000616140 HDAC11Q96DB2 347 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 TAF1DQ9H5J8 278 aaPredicted RBP15.03■□□□□ -0
CPSF1-212ENST00000616140 LRRC4Q9HBW1 653 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 TTC7AQ9ULT0 858 aaPredicted RBP15.03■□□□□ -0
CPSF1-212ENST00000616140 TSPOAP1O95153 1857 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 SPDYE16A6NNV3 312 aaPredicted RBP15.03■□□□□ -0
CPSF1-212ENST00000616140 RASA4BC9J798 803 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 RASA4O43374 803 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 ZWINTO95229 277 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 SEMA3FQ13275 785 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 SPDYE2Q495Y8 402 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 SLFN12LQ6IEE8 588 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 KRT27Q7Z3Y8 459 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 TMEM35BQ8NCS4 154 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.03■□□□□ -01e-8■■■□□ 15.2
CPSF1-212ENST00000616140 EDEM3Q9BZQ6 932 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 SNX12Q9UMY4 172 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 DIS3Q9Y2L1 958 aaKnown RBP15.03■□□□□ -0
CPSF1-212ENST00000616140 ABCA6Q8N139 1617 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 WDR64B1ANS9 1081 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 TMEM270Q6UE05 265 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 MASTLQ96GX5 879 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 HEXIM2Q96MH2 286 aaKnown RBP15.03■□□□□ -0
CPSF1-212ENST00000616140 LRRC1Q9BTT6 524 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 PLA2G12BQ9BX93 195 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 SNX25Q9H3E2 840 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 Q9H521 79 aa15.03■□□□□ -0
CPSF1-212ENST00000616140 IPO5O00410 1097 aaKnown RBP15.02■□□□□ -0
CPSF1-212ENST00000616140 ZNF185O15231 689 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 C21orf2O43822 256 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 PSMA2P25787 234 aa15.02■□□□□ -0
CPSF1-212ENST00000616140 PPP6R3Q5H9R7 873 aaPredicted RBP15.02■□□□□ -0
CPSF1-212ENST00000616140 SEPT12Q8IYM1 358 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms