RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 UBAP2Q5T6F2 1119 aaKnown RBP15.29■□□□□ 0.04
COL6A1-207ENST00000612273 SYN2Q92777 582 aaPredicted RBP15.29■□□□□ 0.04
COL6A1-207ENST00000612273 AMNQ9BXJ7 453 aa15.29■□□□□ 0.04
COL6A1-207ENST00000612273 CNOT8Q9UFF9 292 aaKnown RBP15.29■□□□□ 0.04
COL6A1-207ENST00000612273 ATF5Q9Y2D1 282 aaPredicted RBP15.29■□□□□ 0.04
COL6A1-207ENST00000612273 BBOX1O75936 387 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 JAG1P78504 1218 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 EPHA7Q15375 998 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 LNX1Q8TBB1 728 aaPredicted RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 THAP2Q9H0W7 228 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 ISCUQ9H1K1 167 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 AMFRQ9UKV5 643 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 CLSTN1O94985 981 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 CRKP46108 304 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 ITGB3BPQ13352 177 aaPredicted RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 ORC2Q13416 577 aaPredicted RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 CPNE8Q86YQ8 564 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 LRRC57Q8N9N7 239 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 CTNNBL1Q8WYA6 563 aaPredicted RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 FAM163AQ96GL9 167 aaPredicted RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 FAM84AQ96KN4 292 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 TDRD3Q9H7E2 651 aaKnown RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 DNAJC17Q9NVM6 304 aaKnown RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 CCDC88AQ3V6T2 1871 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 IGKV6D-41A0A0C4DH26 115 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 GOLGA6L7A0A1B0GV03 622 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 MEFVO15553 781 aaPredicted RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 EXOC3O60645 756 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 NDUFB10O96000 172 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 RPL13P26373 211 aaKnown RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 ECHS1P30084 290 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 ECE1P42892 770 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 IFNAR2P48551 515 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 SKOR1P84550 965 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 ODR4Q5SWX8 454 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 KDM7AQ6ZMT4 941 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 B4GALNT4Q76KP1 1039 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 SLFN12Q8IYM2 578 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 SYT2Q8N9I0 419 aaPredicted RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 ETNPPLQ8TBG4 499 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 IPO4Q8TEX9 1081 aaKnown RBP15.28■□□□□ 0.04
COL6A1-207ENST00000612273 ERVK-5Q9HDB9 667 aa15.28■□□□□ 0.04
COL6A1-207ENST00000612273 TGFB1I1O43294 461 aa15.27■□□□□ 0.04
COL6A1-207ENST00000612273 RPA1P27694 616 aa15.27■□□□□ 0.04
COL6A1-207ENST00000612273 MARCKSL1P49006 195 aa15.27■□□□□ 0.04
COL6A1-207ENST00000612273 SPIRE1Q08AE8 756 aa15.27■□□□□ 0.04
COL6A1-207ENST00000612273 SPRED3Q2MJR0 410 aa15.27■□□□□ 0.04
COL6A1-207ENST00000612273 EDRF1Q3B7T1 1238 aa15.27■□□□□ 0.04
COL6A1-207ENST00000612273 SLC20A1Q8WUM9 679 aa15.27■□□□□ 0.04
COL6A1-207ENST00000612273 EFCC1Q9HA90 598 aa15.27■□□□□ 0.04
COL6A1-207ENST00000612273 GGT7Q9UJ14 662 aa15.27■□□□□ 0.04
COL6A1-207ENST00000612273 UTP11Q9Y3A2 253 aaKnown RBP15.27■□□□□ 0.04
COL6A1-207ENST00000612273 DLEC1Q9Y238 1755 aa15.27■□□□□ 0.04
COL6A1-207ENST00000612273 COL16A1Q07092 1604 aaPredicted RBP15.27■□□□□ 0.04
COL6A1-207ENST00000612273 SHBGP04278 402 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 TNFAIP3P21580 790 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 CCDC38Q502W7 563 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 RINT1Q6NUQ1 792 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 CPLX4Q7Z7G2 160 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 BTBD6Q96KE9 485 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 CTTNBP2NLQ9P2B4 639 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 PNMA2Q9UL42 364 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 ACTN3Q08043 901 aaPredicted RBP15.27■□□□□ 0.03
COL6A1-207ENST00000612273 ADCY1Q08828 1119 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 IFI16Q16666 785 aaKnown RBP15.27■□□□□ 0.03
COL6A1-207ENST00000612273 KCNV1Q6PIU1 500 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 MMS22LQ6ZRQ5 1243 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 FRMD5Q7Z6J6 570 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 TAX1BP1Q86VP1 789 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 FAM178BQ8IXR5 827 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 SCFD2Q8WU76 684 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 CABS1Q96KC9 395 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 TMBIM4Q9HC24 238 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 SIX2Q9NPC8 291 aa15.27■□□□□ 0.03
COL6A1-207ENST00000612273 TYW1Q9NV66 732 aaKnown RBP15.27■□□□□ 0.03
COL6A1-207ENST00000612273 CALCAP01258 141 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 MESDQ14696 234 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 LRCH2Q5VUJ6 765 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 NT5DC3Q86UY8 548 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 LENG9Q96B70 501 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 LRRC45Q96CN5 670 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 JPH2Q9BR39 696 aaPredicted RBP15.26■□□□□ 0.03
COL6A1-207ENST00000612273 CD248Q9HCU0 757 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 COL22A1Q8NFW1 1626 aaPredicted RBP15.26■□□□□ 0.03
COL6A1-207ENST00000612273 LAMB1P07942 1786 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 TMEM150BA6NC51 233 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 GOLGA8IPA6NC78 632 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 GOLGA8JA6NMD2 632 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 KCNJ1P48048 391 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 NSMFQ6X4W1 530 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 SIAH1Q8IUQ4 282 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 ZSWIM2Q8NEG5 633 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 KAT5Q92993 513 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 CYFIP2Q96F07 1278 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 PBKQ96KB5 322 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 CCDC114Q96M63 670 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 MLXIPLQ9NP71 852 aa15.26■□□□□ 0.03
COL6A1-207ENST00000612273 DDX60LQ5H9U9 1706 aaKnown RBP15.26■□□□□ 0.03
COL6A1-207ENST00000612273 MYH1P12882 1939 aa15.25■□□□□ 0.03
COL6A1-207ENST00000612273 HMGB1P1B2RPK0 211 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms