RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 TMEM221A6NGB7 291 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 LOC730098B7Z3J9 87 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 C9IYK1 514 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 RBAK-RBAKDNI3L0D1 243 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 M0R296 226 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 PER2O15055 1255 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 ATF7P17544 494 aaPredicted RBP10.85□□□□□ -0.67
VRK3-224ENST00000601849 CLK2P49760 499 aaKnown RBP10.85□□□□□ -0.67
VRK3-224ENST00000601849 METAP2P50579 478 aaKnown RBP eCLIP10.85□□□□□ -0.67
VRK3-224ENST00000601849 PTPN5P54829 565 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 FAM189BP81408 668 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 PFKFB3Q16875 520 aaPredicted RBP10.85□□□□□ -0.67
VRK3-224ENST00000601849 KIZQ2M2Z5 673 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 TSGA10IPQ3SY00 556 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 FAM102BQ5T8I3 360 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 CES5AQ6NT32 575 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 TRMT1LQ7Z2T5 733 aaKnown RBP10.85□□□□□ -0.67
VRK3-224ENST00000601849 TMC7Q7Z402 723 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 ADGRD2Q7Z7M1 963 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 CCDC60Q8IWA6 550 aaPredicted RBP10.85□□□□□ -0.67
VRK3-224ENST00000601849 REXO1Q8N1G1 1221 aaKnown RBP10.85□□□□□ -0.67
VRK3-224ENST00000601849 MRPS27Q92552 414 aaKnown RBP10.85□□□□□ -0.67
VRK3-224ENST00000601849 SCLT1Q96NL6 688 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 OSMRQ99650 979 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 TMEM117Q9H0C3 514 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 ENTPD7Q9NQZ7 604 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 BARX2Q9UMQ3 279 aaPredicted RBP10.85□□□□□ -0.67
VRK3-224ENST00000601849 AKT3Q9Y243 479 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 USP15Q9Y4E8 981 aaPredicted RBP10.85□□□□□ -0.67
VRK3-224ENST00000601849 MAFBQ9Y5Q3 323 aaPredicted RBP10.85□□□□□ -0.67
VRK3-224ENST00000601849 WDR64B1ANS9 1081 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 EOMESO95936 686 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 CCNE2O96020 404 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 HOXB8P17481 243 aaPredicted RBP10.84□□□□□ -0.67
VRK3-224ENST00000601849 EIF4BP23588 611 aaKnown RBP10.84□□□□□ -0.67
VRK3-224ENST00000601849 TECP42680 631 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 DNM2P50570 870 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 IRX6P78412 446 aaPredicted RBP10.84□□□□□ -0.67
VRK3-224ENST00000601849 ZXDAP98168 799 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 EXOSC10Q01780 885 aaKnown RBP10.84□□□□□ -0.67
VRK3-224ENST00000601849 PLCB3Q01970 1234 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 DUSP6Q16828 381 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 TPRNQ4KMQ1 711 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 BMP2KLQ5H9B9 411 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 EFCAB12Q6NXP0 572 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 COLGALT1Q8NBJ5 622 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 RSPH1Q8WYR4 309 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 ZNF558Q96NG5 402 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 CDHR5Q9HBB8 845 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 DACT1Q9NYF0 836 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 GABBR1Q9UBS5 961 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 NR2E1Q9Y466 385 aa10.84□□□□□ -0.67
VRK3-224ENST00000601849 TRIOO75962 3097 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 ESYT2A0FGR8 921 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 FAM86B1E9PN63 330 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 DHX15O43143 795 aaKnown RBP10.83□□□□□ -0.68
VRK3-224ENST00000601849 MGEA5O60502 916 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 C22orf31O95567 290 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 VTNP04004 478 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 FAM86B2P0C5J1 330 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 SKIP12755 728 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 CA8P35219 290 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 ADD1P35611 737 aaKnown RBP10.83□□□□□ -0.68
VRK3-224ENST00000601849 ALDH7A1P49419 539 aaKnown RBP10.83□□□□□ -0.68
VRK3-224ENST00000601849 GATMP50440 423 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 NLRP11P59045 1033 aaKnown RBP10.83□□□□□ -0.68
VRK3-224ENST00000601849 ERVFC1P60507 584 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 SIGLEC14Q08ET2 396 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 CBX2Q14781 532 aaPredicted RBP10.83□□□□□ -0.68
VRK3-224ENST00000601849 PRR16Q569H4 304 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 PLPP4Q5VZY2 271 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 TYW1BQ6NUM6 668 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 KCNT2Q6UVM3 1135 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 TMEM184AQ6ZMB5 413 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 LRRC43Q8N309 656 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 FBXL6Q8N531 539 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 RNF169Q8NCN4 708 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 CCDC148Q8NFR7 591 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 RASGRP4Q8TDF6 673 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 CASP10Q92851 521 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 NECTIN4Q96NY8 510 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 PPP1R16BQ96T49 567 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 TCF25Q9BQ70 676 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 C22orf23Q9BZE7 217 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 INO80BQ9C086 356 aaPredicted RBP10.83□□□□□ -0.68
VRK3-224ENST00000601849 ZMYND12Q9H0C1 365 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 SPG21Q9NZD8 308 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 BRPF3Q9ULD4 1205 aa10.83□□□□□ -0.68
VRK3-224ENST00000601849 IGLV3-22A0A075B6J6 115 aa10.82□□□□□ -0.68
VRK3-224ENST00000601849 GPR32O75388 356 aa10.82□□□□□ -0.68
VRK3-224ENST00000601849 FGFR1P11362 822 aa10.82□□□□□ -0.68
VRK3-224ENST00000601849 ATP4AP20648 1035 aa10.82□□□□□ -0.68
VRK3-224ENST00000601849 SFNP31947 248 aa10.82□□□□□ -0.68
VRK3-224ENST00000601849 USP11P51784 963 aa10.82□□□□□ -0.68
VRK3-224ENST00000601849 TBC1D8BQ0IIM8 1120 aa10.82□□□□□ -0.68
VRK3-224ENST00000601849 FUT2Q10981 343 aa10.82□□□□□ -0.68
VRK3-224ENST00000601849 SMC1AQ14683 1233 aaKnown RBP10.82□□□□□ -0.68
VRK3-224ENST00000601849 ANKRD54Q6NXT1 300 aa10.82□□□□□ -0.68
VRK3-224ENST00000601849 FAM228AQ86W67 206 aa10.82□□□□□ -0.68
VRK3-224ENST00000601849 TMEM40Q8WWA1 233 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms