RNA–Protein interactions for RNA: ENST00000601614.6

SSBP4-211, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 628 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-211ENST00000601614 NFASCO94856 1347 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 IGKV6D-21A0A0A0MT36 114 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 CLASP2O75122 1294 aaKnown RBP18.3■□□□□ 0.52
SSBP4-211ENST00000601614 CCNE2O96020 404 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 RXRAP19793 462 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 SMARCA1P28370 1054 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 CLCN5P51795 746 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 NUCB1Q02818 461 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 ITIH3Q06033 890 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 COL9A3Q14050 684 aaPredicted RBP18.3■□□□□ 0.52
SSBP4-211ENST00000601614 KIZQ2M2Z5 673 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 TPRNQ4KMQ1 711 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 RARS2Q5T160 578 aaKnown RBP18.3■□□□□ 0.52
SSBP4-211ENST00000601614 CES5AQ6NT32 575 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 RALYLQ86SE5 291 aaKnown RBP18.3■□□□□ 0.52
SSBP4-211ENST00000601614 MRPL43Q8N983 215 aaKnown RBP18.3■□□□□ 0.52
SSBP4-211ENST00000601614 NCOA7Q8NI08 942 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 CTCFLQ8NI51 663 aaPredicted RBP18.3■□□□□ 0.52
SSBP4-211ENST00000601614 TNPO1Q92973 898 aaKnown RBP18.3■□□□□ 0.52
SSBP4-211ENST00000601614 PGBD1Q96JS3 809 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 NECTIN4Q96NY8 510 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 MAP3K14Q99558 947 aa18.3■□□□□ 0.52
SSBP4-211ENST00000601614 U3KPZ7 1027 aaPredicted RBP18.3■□□□□ 0.52
SSBP4-211ENST00000601614 SPDYE3A6NKU9 549 aa18.29■□□□□ 0.52
SSBP4-211ENST00000601614 GPR182O15218 404 aa18.29■□□□□ 0.52
SSBP4-211ENST00000601614 GPR32O75388 356 aa18.29■□□□□ 0.52
SSBP4-211ENST00000601614 DDAH1O94760 285 aa18.29■□□□□ 0.52
SSBP4-211ENST00000601614 IGHDP01880 384 aa18.29■□□□□ 0.52
SSBP4-211ENST00000601614 NPR3P17342 541 aa18.29■□□□□ 0.52
SSBP4-211ENST00000601614 SART3Q15020 963 aaKnown RBP18.29■□□□□ 0.52
SSBP4-211ENST00000601614 MCTP2Q6DN12 878 aa18.29■□□□□ 0.52
SSBP4-211ENST00000601614 CCDC60Q8IWA6 550 aaPredicted RBP18.29■□□□□ 0.52
SSBP4-211ENST00000601614 ZDHHC14Q8IZN3 488 aa18.29■□□□□ 0.52
SSBP4-211ENST00000601614 ZNF558Q96NG5 402 aa18.29■□□□□ 0.52
SSBP4-211ENST00000601614 SDF4Q9BRK5 362 aa18.29■□□□□ 0.52
SSBP4-211ENST00000601614 DNAH14Q0VDD8 3507 aa18.28■□□□□ 0.52
SSBP4-211ENST00000601614 HBP1O60381 514 aa18.28■□□□□ 0.52
SSBP4-211ENST00000601614 VTNP04004 478 aa18.28■□□□□ 0.52
SSBP4-211ENST00000601614 ATP4AP20648 1035 aa18.28■□□□□ 0.52
SSBP4-211ENST00000601614 CRYBB1P53674 252 aaPredicted RBP18.28■□□□□ 0.52
SSBP4-211ENST00000601614 SMC1AQ14683 1233 aaKnown RBP18.28■□□□□ 0.52
SSBP4-211ENST00000601614 SLC39A11Q8N1S5 342 aa18.28■□□□□ 0.52
SSBP4-211ENST00000601614 LRRC43Q8N309 656 aa18.28■□□□□ 0.52
SSBP4-211ENST00000601614 TDRD5Q8NAT2 981 aaKnown RBP18.28■□□□□ 0.52
SSBP4-211ENST00000601614 FLCNQ8NFG4 579 aa18.28■□□□□ 0.52
SSBP4-211ENST00000601614 MFSD1Q9H3U5 465 aa18.28■□□□□ 0.52
SSBP4-211ENST00000601614 AGO4Q9HCK5 861 aaKnown RBP18.28■□□□□ 0.52
SSBP4-211ENST00000601614 RNF216Q9NWF9 866 aaPredicted RBP18.28■□□□□ 0.52
SSBP4-211ENST00000601614 SPG21Q9NZD8 308 aa18.28■□□□□ 0.52
SSBP4-211ENST00000601614 DMXL1Q9Y485 3027 aa18.27■□□□□ 0.52
SSBP4-211ENST00000601614 MED19A0JLT2 244 aaPredicted RBP18.27■□□□□ 0.52
SSBP4-211ENST00000601614 DDX39AO00148 427 aaKnown RBP18.27■□□□□ 0.52
SSBP4-211ENST00000601614 C22orf31O95567 290 aa18.27■□□□□ 0.52
SSBP4-211ENST00000601614 KIF5BP33176 963 aa18.27■□□□□ 0.52
SSBP4-211ENST00000601614 PPM1AP35813 382 aa18.27■□□□□ 0.52
SSBP4-211ENST00000601614 MTHFRP42898 656 aa18.27■□□□□ 0.52
SSBP4-211ENST00000601614 CLLU1OSQ5K130 101 aa18.27■□□□□ 0.52
SSBP4-211ENST00000601614 KIAA1841Q6NSI8 718 aa18.27■□□□□ 0.52
SSBP4-211ENST00000601614 ABHD15Q6UXT9 468 aa18.27■□□□□ 0.52
SSBP4-211ENST00000601614 FAM43BQ6ZT52 329 aaPredicted RBP18.27■□□□□ 0.52
SSBP4-211ENST00000601614 RAB11FIP4Q86YS3 637 aa18.27■□□□□ 0.52
SSBP4-211ENST00000601614 COL1A2P08123 1366 aa18.27■□□□□ 0.51
SSBP4-211ENST00000601614 NT5C1B-RDH14C9J2C7 533 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 GSPT1P15170 499 aaKnown RBP18.26■□□□□ 0.51
SSBP4-211ENST00000601614 EPCAMP16422 314 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 SLC26A2P50443 739 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 KRT17Q04695 432 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 ODR4Q5SWX8 454 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 TYW1BQ6NUM6 668 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 ECHDC2Q86YB7 292 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 CCDC105Q8IYK2 499 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 CCDC82Q8N4S0 544 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 AUTS2Q8WXX7 1259 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 LZTS2Q9BRK4 669 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 FANCMQ8IYD8 2048 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 WDR87Q6ZQQ6 2873 aa18.26■□□□□ 0.51
SSBP4-211ENST00000601614 CACNA1BQ00975 2339 aa18.25■□□□□ 0.51
SSBP4-211ENST00000601614 EOMESO95936 686 aa18.25■□□□□ 0.51
SSBP4-211ENST00000601614 AOC1P19801 751 aa18.25■□□□□ 0.51
SSBP4-211ENST00000601614 METAP2P50579 478 aaKnown RBP eCLIP18.25■□□□□ 0.511e-8■■■■□ 19.7
SSBP4-211ENST00000601614 ANGPT1Q15389 498 aa18.25■□□□□ 0.51
SSBP4-211ENST00000601614 CEP55Q53EZ4 464 aa18.25■□□□□ 0.51
SSBP4-211ENST00000601614 ZNF484Q5JVG2 852 aa18.25■□□□□ 0.51
SSBP4-211ENST00000601614 TMEM173Q86WV6 379 aaPredicted RBP18.25■□□□□ 0.51
SSBP4-211ENST00000601614 RMDN1Q96DB5 314 aa18.25■□□□□ 0.51
SSBP4-211ENST00000601614 DBR1Q9UK59 544 aaKnown RBP18.25■□□□□ 0.51
SSBP4-211ENST00000601614 USTQ9Y2C2 406 aa18.25■□□□□ 0.51
SSBP4-211ENST00000601614 MEIS1O00470 390 aa18.24■□□□□ 0.51
SSBP4-211ENST00000601614 BACH1O14867 736 aa18.24■□□□□ 0.51
SSBP4-211ENST00000601614 GNAQP50148 359 aa18.24■□□□□ 0.51
SSBP4-211ENST00000601614 PDXDC2PQ6P474 469 aa18.24■□□□□ 0.51
SSBP4-211ENST00000601614 HEATR3Q7Z4Q2 680 aa18.24■□□□□ 0.51
SSBP4-211ENST00000601614 ZNF302Q9NR11 478 aa18.24■□□□□ 0.51
SSBP4-211ENST00000601614 CEP250Q9BV73 2442 aa18.24■□□□□ 0.51
SSBP4-211ENST00000601614 OTOGLQ3ZCN5 2332 aa18.23■□□□□ 0.51
SSBP4-211ENST00000601614 DHX15O43143 795 aaKnown RBP18.23■□□□□ 0.51
SSBP4-211ENST00000601614 HOXA2O43364 376 aa18.23■□□□□ 0.51
SSBP4-211ENST00000601614 CXCL14O95715 111 aa18.23■□□□□ 0.51
SSBP4-211ENST00000601614 CA8P35219 290 aa18.23■□□□□ 0.51
SSBP4-211ENST00000601614 CLCN3P51790 818 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms