RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 CEP63Q96MT8 703 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 ZIC5Q96T25 663 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 ABHD16BQ9H3Z7 469 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 PDLIM7Q9NR12 457 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 TRAF3IP3Q9Y228 551 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 PDXKO00764 312 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 LGR5O75473 907 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 HOXC6P09630 235 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 HSDL1Q3SXM5 330 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 FILIP1Q7Z7B0 1213 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 SLC17A8Q8NDX2 589 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 MCPH1Q8NEM0 835 aa19.48■□□□□ 0.71
SHKBP1-224ENST00000600718 N4BP3O15049 544 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 GH1P01241 217 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 HOXD13P35453 343 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 GSDMDP57764 484 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 GRM1Q13255 1194 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 ALCAMQ13740 583 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 CCDC144BQ3MJ40 725 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 FAM102BQ5T8I3 360 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 PLPPR4Q7Z2D5 763 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 REM2Q8IYK8 340 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 USP6NLQ92738 828 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 KIFAP3Q92845 792 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 COPS5Q92905 334 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 FAM167AQ96KS9 214 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 CNOT6LQ96LI5 555 aaKnown RBP19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 VPS16Q9H269 839 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 TAB2Q9NYJ8 693 aa19.47■□□□□ 0.71
SHKBP1-224ENST00000600718 CALUO43852 315 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 PTGS1P23219 599 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 IRF5Q13568 498 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 ACVR2BQ13705 512 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 DEFB115Q30KQ5 88 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 LRRC55Q6ZSA7 311 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 ZC3H3Q8IXZ2 948 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 STRA6Q9BX79 667 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 C17orf75Q9HAS0 396 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 TYW1Q9NV66 732 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 PPME1Q9Y570 386 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 GNA14O95837 355 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 ARHGAP1Q07960 439 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 MTERF2Q49AM1 385 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 IQSEC1Q6DN90 963 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 EMID1Q96A84 441 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 TUBGCP2Q9BSJ2 902 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 ST6GALNAC4Q9H4F1 302 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 ATP6V0A4Q9HBG4 840 aa19.46■□□□□ 0.71
SHKBP1-224ENST00000600718 TEX33O43247 280 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 RGS2P41220 211 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 MTIF2P46199 727 aaKnown RBP19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 SLC26A2P50443 739 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 RTP1P59025 263 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 ZC2HC1CQ53FD0 456 aaPredicted RBP19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 TMEM63BQ5T3F8 832 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 SPECC1LQ69YQ0 1117 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 ZSCAN30Q86W11 494 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 SOCS4Q8WXH5 440 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 GLG1Q92896 1179 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 EEF2KMTQ96G04 330 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 SMARCAD1Q9H4L7 1026 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 EMSYQ7Z589 1322 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 WDR81Q562E7 1941 aa19.45■□□□□ 0.7
SHKBP1-224ENST00000600718 RASSF10A6NK89 507 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 NKRFO15226 690 aaKnown RBP eCLIP19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 PPP1R37O75864 691 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 ADCYAP1R1P41586 468 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 ADAM9Q13443 819 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 BBXQ8WY36 941 aaPredicted RBP19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 PKNOX2Q96KN3 472 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 GPRC5CQ9NQ84 441 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 CREBZFQ9NS37 354 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 KCNG1Q9UIX4 513 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 GJD2Q9UKL4 321 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 ZKSCAN5Q9Y2L8 839 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 TNPO2O14787 897 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 CETN3O15182 167 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 RPL13P26373 211 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 PBX1P40424 430 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 RFC5P40937 340 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 SMTNP53814 917 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 TARBP2Q15633 366 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 DUSP28Q4G0W2 176 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 ZNF830Q96NB3 372 aaPredicted RBP19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 NTPCRQ9BSD7 190 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 MCM3APO60318 1980 aa19.44■□□□□ 0.7
SHKBP1-224ENST00000600718 LGALS16A8MUM7 142 aa19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 K7ENM7 598 aa19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 ECM2O94769 699 aaPredicted RBP19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 POLGP54098 1239 aaPredicted RBP19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 NCKAP1LP55160 1127 aa19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 PEX3P56589 373 aa19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 NFIL3Q16649 462 aa19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 OLFML2BQ68BL8 750 aa19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 PPTC7Q8NI37 304 aa19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 SPIRE2Q8WWL2 714 aa19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 CAPNS2Q96L46 248 aa19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 CEP89Q96ST8 783 aa19.43■□□□□ 0.7
SHKBP1-224ENST00000600718 DHX33Q9H6R0 707 aaKnown RBP19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms