RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SRCAPQ6ZRS2 3230 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 POTEFA5A3E0 1075 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 POTEIP0CG38 1075 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 CDK8P49336 464 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 PLCB4Q15147 1175 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 ZCWPW2Q504Y3 356 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 POTEGQ6S5H5 508 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 POTEEQ6S8J3 1075 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 GLYCTKQ8IVS8 523 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 PRCCQ92733 491 aaPredicted RBP19.93■□□□□ 0.78
UPF1-210ENST00000600689 ERVK-5Q9HDB9 667 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 DBR1Q9UK59 544 aaKnown RBP19.93■□□□□ 0.78
UPF1-210ENST00000600689 EDIL3O43854 480 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 ATP6V1G2O95670 118 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 PLA2G4BP0C869 781 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 FGFR4P22455 802 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 PEX19P40855 299 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 CASP4P49662 377 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 PABPC4Q13310 644 aaKnown RBP eCLIP19.93■□□□□ 0.784e-12■■■□□ 18.7
UPF1-210ENST00000600689 MAEAQ7L5Y9 396 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 ABCF3Q9NUQ8 709 aa19.93■□□□□ 0.78
UPF1-210ENST00000600689 CCT8L1PA6NM43 557 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 SLURP2P0DP57 97 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 IL1R1P14778 569 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 PICALMQ13492 652 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 MTMR3Q13615 1198 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 CCDC65Q8IXS2 484 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 LRRC57Q8N9N7 239 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 EDEM3Q9BZQ6 932 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 DNAJC17Q9NVM6 304 aaKnown RBP19.92■□□□□ 0.78
UPF1-210ENST00000600689 ARMCX3Q9UH62 379 aaPredicted RBP19.92■□□□□ 0.78
UPF1-210ENST00000600689 PPP1R9AQ9ULJ8 1098 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 UPP2O95045 317 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 ATP2B4P23634 1241 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 EMC10Q5UCC4 262 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 NSMCE1Q8WV22 266 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 DYDC1Q8WWB3 177 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 AIPL1Q9NZN9 384 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 NAV1Q8NEY1 1877 aa19.92■□□□□ 0.78
UPF1-210ENST00000600689 POLRMTO00411 1230 aaKnown RBP19.91■□□□□ 0.78
UPF1-210ENST00000600689 LDHCP07864 332 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 GTF2IP78347 998 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 SLC29A2Q14542 456 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 TTBK2Q6IQ55 1244 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 PROM2Q8N271 834 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 ACTRT1Q8TDG2 376 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 EPS8L3Q8TE67 593 aaKnown RBP19.91■□□□□ 0.78
UPF1-210ENST00000600689 MXD3Q9BW11 206 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 INTS9Q9NV88 658 aaKnown RBP19.91■□□□□ 0.78
UPF1-210ENST00000600689 PTPN22Q9Y2R2 807 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 ROBO3Q96MS0 1386 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 RGS16O15492 202 aaPredicted RBP19.91■□□□□ 0.78
UPF1-210ENST00000600689 FLOT1O75955 427 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 GALCP54803 685 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 KCNA1Q09470 495 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 DRP2Q13474 957 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 ZKSCAN8Q15776 578 aaPredicted RBP19.91■□□□□ 0.78
UPF1-210ENST00000600689 WLSQ5T9L3 541 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 SLC30A10Q6XR72 485 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 C15orf52Q6ZUT6 534 aaKnown RBP19.91■□□□□ 0.78
UPF1-210ENST00000600689 ANKS4BQ8N8V4 417 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 FBXO25Q8TCJ0 367 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.91■□□□□ 0.78
UPF1-210ENST00000600689 CDK5RAP2Q96SN8 1893 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 GPR75-ASB3A0A0A6YYF3 556 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 A8MUI8 341 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 GCFC2P16383 781 aaKnown RBP19.91■□□□□ 0.78
UPF1-210ENST00000600689 RHBDL3P58872 404 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 KCNJ2P63252 427 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 CYP4A11Q02928 519 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 AMFRQ9UKV5 643 aa19.91■□□□□ 0.78
UPF1-210ENST00000600689 USP17L15C9J2P7 530 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 USP17L13C9JLJ4 530 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 USP17L11C9JVI0 530 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 USP17L18D6R9N7 530 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 USP17L22D6RA61 530 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 USP17L17D6RBQ6 530 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 USP17L19D6RCP7 530 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 USP17L20D6RJB6 530 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 PON1P27169 355 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 DR1Q01658 176 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 USP17L24Q0WX57 530 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 AGBL2Q5U5Z8 902 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 USP17L6PQ6QN14 398 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 SYN2Q92777 582 aaPredicted RBP19.9■□□□□ 0.78
UPF1-210ENST00000600689 HAS1Q92839 578 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 SPZ1Q9BXG8 430 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.9■□□□□ 0.78
UPF1-210ENST00000600689 SAMD15Q9P1V8 674 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 DDX3XO00571 662 aaKnown RBP eCLIP19.9■□□□□ 0.78
UPF1-210ENST00000600689 FXR2P51116 673 aaKnown RBP eCLIP19.9■□□□□ 0.784e-9■□□□□ 11.1
UPF1-210ENST00000600689 PSMC6P62333 389 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 SEMA3FQ13275 785 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 IFI16Q16666 785 aaKnown RBP19.9■□□□□ 0.78
UPF1-210ENST00000600689 ARHGAP44Q17R89 818 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 DENND2CQ68D51 928 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 ANKRD42Q8N9B4 389 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 SEMA4AQ9H3S1 761 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 GCNT4Q9P109 453 aa19.9■□□□□ 0.78
UPF1-210ENST00000600689 AGAP1Q9UPQ3 857 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms