RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ZDHHC9Q9Y397 364 aa21.82■■□□□ 1.08
SHKBP1-221ENST00000599833 CDC25AP30304 524 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 RARRES1P49788 294 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 TBC1D8BQ0IIM8 1120 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 DTHD1Q6ZMT9 781 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 RSPH3Q86UC2 560 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 METTL13Q8N6R0 699 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 PIGOQ8TEQ8 1089 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 USP28Q96RU2 1077 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 ZSCAN16Q9H4T2 348 aaPredicted RBP21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 ANKEF1Q9NU02 776 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 LRWD1Q9UFC0 647 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 PPME1Q9Y570 386 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 SQORQ9Y6N5 450 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 MORC2Q9Y6X9 1032 aaPredicted RBP21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 COL6A3P12111 3177 aa21.81■■□□□ 1.08
SHKBP1-221ENST00000599833 GRXCR1A8MXD5 290 aa21.8■■□□□ 1.08
SHKBP1-221ENST00000599833 BAIAP3O94812 1187 aa21.8■■□□□ 1.08
SHKBP1-221ENST00000599833 WDR5P61964 334 aaKnown RBP21.8■■□□□ 1.08
SHKBP1-221ENST00000599833 TMEM266Q2M3C6 531 aa21.8■■□□□ 1.08
SHKBP1-221ENST00000599833 IER5Q5VY09 327 aa21.8■■□□□ 1.08
SHKBP1-221ENST00000599833 TSHZ1Q6ZSZ6 1077 aa21.8■■□□□ 1.08
SHKBP1-221ENST00000599833 CEP170P1Q96L14 293 aa21.8■■□□□ 1.08
SHKBP1-221ENST00000599833 ZSCAN22P10073 491 aaPredicted RBP21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 XRCC6P12956 609 aaKnown RBP eCLIP21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 MUTP22033 750 aa21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 GPC3P51654 580 aa21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 DEFB103AP81534 67 aa21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 KIZQ2M2Z5 673 aa21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 HYIQ5T013 277 aa21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 LRRC15Q8TF66 581 aa21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 LINC01599Q8WXQ3 324 aa21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 SUGCTQ9HAC7 445 aa21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 DBR1Q9UK59 544 aaKnown RBP21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 COL4A6Q14031 1691 aa21.79■■□□□ 1.08
SHKBP1-221ENST00000599833 REV3LO60673 3130 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 VWA3AA6NCI4 1184 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 RFC5P40937 340 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 SMAD3P84022 425 aaKnown RBP21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 XKR9Q5GH70 373 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 OTUD6AQ7L8S5 288 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 KCNK18Q7Z418 384 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 PNMA5Q96PV4 448 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 PPP1R16BQ96T49 567 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 OSMRQ99650 979 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 IFIH1Q9BYX4 1025 aaKnown RBP21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 TMX1Q9H3N1 280 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 ERVK-5Q9HDB9 667 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 FBXO2Q9UK22 296 aaPredicted RBP21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 NOC2LQ9Y3T9 749 aaKnown RBP21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 TTC3P53804 2025 aa21.78■■□□□ 1.08
SHKBP1-221ENST00000599833 ABHD14A-ACY1A0A1B0GW23 586 aa21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 F13A1P00488 732 aa21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 HSP90AA1P07900 732 aaKnown RBP21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 CD52P31358 61 aa21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 NASPP49321 788 aaPredicted RBP21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 CRYBB1P53674 252 aaPredicted RBP21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 NLRP11P59045 1033 aaKnown RBP21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 EMC2Q15006 297 aa21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 HAUS3Q68CZ6 603 aa21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 RTN4RL1Q86UN2 441 aaPredicted RBP21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 FAM228AQ86W67 206 aa21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 SNX29Q8TEQ0 813 aa21.77■■□□□ 1.08
SHKBP1-221ENST00000599833 BRD1O95696 1058 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 BMP15O95972 392 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 ACTN1P12814 892 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 TMOD1P28289 359 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 DDIT3P35638 169 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 CCT6AP40227 531 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 PBX2P40425 430 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 GRB10Q13322 594 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 TMCO2Q7Z6W1 182 aaPredicted RBP21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 KSR1Q8IVT5 923 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 CRIPAKQ8N1N5 446 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 ERMNQ8TAM6 284 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 SEPT8Q92599 483 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 ZNF668Q96K58 619 aaPredicted RBP21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 NACC1Q96RE7 527 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 PBX4Q9BYU1 374 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 BMP2KQ9NSY1 1161 aaPredicted RBP21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 SUCLA2Q9P2R7 463 aaPredicted RBP21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 PADI3Q9ULW8 664 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 AKT3Q9Y243 479 aa21.76■■□□□ 1.07
SHKBP1-221ENST00000599833 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 PDIA4P13667 645 aaKnown RBP21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 IKBKEQ14164 716 aa21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 FOXD4L5Q5VV16 416 aaPredicted RBP21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 USP38Q8NB14 1042 aa21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 PHOSPHO2Q8TCD6 241 aa21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 FOXD4L4Q8WXT5 416 aaPredicted RBP21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 APBB2Q92870 758 aa21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 TMEM143Q96AN5 459 aa21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 RAB34Q9BZG1 259 aa21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 DDX19AQ9NUU7 478 aaKnown RBP21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 KIAA1024Q9UPX6 916 aa21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 SLC4A7Q9Y6M7 1214 aa21.75■■□□□ 1.07
SHKBP1-221ENST00000599833 ZBBXA8MT70 800 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms