RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 UBA7P41226 1012 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 KRT76Q01546 638 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 GRIN1Q05586 938 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 ITGB3BPQ13352 177 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 PPP2R5CQ13362 524 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 NEDD9Q14511 834 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 IL17AQ16552 155 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 SPECC1Q5M775 1068 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 RESP18Q5W5W9 173 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 KRT79Q5XKE5 535 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 HAUS3Q68CZ6 603 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 SUGP1Q8IWZ8 645 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 FBXL6Q8N531 539 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 IGSF22Q8N9C0 903 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 PABPC5Q96DU9 382 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 TGS1Q96RS0 853 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 JPH1Q9HDC5 661 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 VAV3Q9UKW4 847 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 MTUS1Q9ULD2 1270 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 TRPC6Q9Y210 931 aa13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 GNEQ9Y223 722 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-213ENST00000597325 KDM3AQ9Y4C1 1321 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 LINC01553A4QN01 128 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 BAIAP3O94812 1187 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 TXNP10599 105 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 KCNA2P16389 499 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 UBA1P22314 1058 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 PSMC6P62333 389 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 SEMA3FQ13275 785 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 PDIA5Q14554 519 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 SMAD2Q15796 467 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 SHC4Q6S5L8 630 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 TMCO2Q7Z6W1 182 aaPredicted RBP13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 SNX29Q8TEQ0 813 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 CDK5RAP3Q96JB5 506 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 SENP7Q9BQF6 1050 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 PYM1Q9BRP8 204 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 TRMT13Q9NUP7 481 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 SLC9A2Q9UBY0 812 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 CCDC39Q9UFE4 941 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 SAMM50Q9Y512 469 aa13.49□□□□□ -0.25
SHKBP1-213ENST00000597325 WDR64B1ANS9 1081 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 ATP9AO75110 1047 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 GGPS1O95749 300 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 PFKFB1P16118 471 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 SFNP31947 248 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 LTBRP36941 435 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 JAK3P52333 1124 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 VCPP55072 806 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 WDR5P61964 334 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 FSCN1Q16658 493 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 SKOR2Q2VWA4 1001 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 ZNF746Q6NUN9 644 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 MIER3Q7Z3K6 550 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 CABP7Q86V35 215 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 SMAP1Q8IYB5 467 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 MRPL38Q96DV4 380 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 CALML4Q96GE6 196 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 UNC45AQ9H3U1 944 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 MLXIPQ9HAP2 919 aa13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 DDX41Q9UJV9 622 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-213ENST00000597325 A0A1B0GVL5 298 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 RBM47A0AV96 593 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 PP2D1A8MPX8 630 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 H0Y858 1186 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 PITPNM1O00562 1244 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 NOP56O00567 594 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 NKRFO15226 690 aaKnown RBP eCLIP13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 DHX15O43143 795 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 SLC26A4O43511 780 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 ARIH2O95376 493 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 IQCF3P0C7M6 154 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 PTGS1P23219 599 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 CCT6AP40227 531 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 SYKP43405 635 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 SP4Q02446 784 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 FAM160A1Q05DH4 1040 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 SPIRE1Q08AE8 756 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 ZRSR1Q15695 479 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 LY6KQ17RY6 165 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 IQSEC1Q6DN90 963 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 TAPT1Q6NXT6 567 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 METTL7BQ6UX53 244 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 CYFIP1Q7L576 1253 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 TLK2Q86UE8 772 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 DHX37Q8IY37 1157 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 RDM1Q8NG50 284 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 EPSTI1Q96J88 318 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 POP1Q99575 1024 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 RAD9AQ99638 391 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 CCSER1Q9C0I3 900 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 GOLPH3LQ9H4A5 285 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 TLR9Q9NR96 1032 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 PDGFCQ9NRA1 345 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 KCNH3Q9ULD8 1083 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 ACACBO00763 2458 aa13.47□□□□□ -0.25
SHKBP1-213ENST00000597325 SORBS3O60504 671 aa13.46□□□□□ -0.25
SHKBP1-213ENST00000597325 KINO60870 393 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-213ENST00000597325 GJB5O95377 273 aa13.46□□□□□ -0.25
SHKBP1-213ENST00000597325 GH1P01241 217 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms