RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 FAM173BQ6P4H8 233 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 SPRED2Q7Z698 418 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 CATSPER3Q86XQ3 398 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 HERC6Q8IVU3 1022 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 DEFB123Q8N688 67 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 SEPT8Q92599 483 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 GUCD1Q96NT3 240 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 IFIH1Q9BYX4 1025 aaKnown RBP12.49□□□□□ -0.41
VRK3-210ENST00000596121 MTIF3Q9H2K0 278 aaKnown RBP12.49□□□□□ -0.41
VRK3-210ENST00000596121 NKX2-4Q9H2Z4 354 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 TMX1Q9H3N1 280 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 SEMA6BQ9H3T3 888 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 BMP2KQ9NSY1 1161 aaPredicted RBP12.49□□□□□ -0.41
VRK3-210ENST00000596121 MTMR10Q9NXD2 777 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 PADI3Q9ULW8 664 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 MTMR6Q9Y217 621 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 GINS2Q9Y248 185 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 NOC2LQ9Y3T9 749 aaKnown RBP12.49□□□□□ -0.41
VRK3-210ENST00000596121 LCHNA4D1U4 455 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 VPS37CA5D8V6 355 aaPredicted RBP12.48□□□□□ -0.41
VRK3-210ENST00000596121 PP2D1A8MPX8 630 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 ENPP3O14638 875 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 GPC3P51654 580 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 NLRP11P59045 1033 aaKnown RBP12.48□□□□□ -0.41
VRK3-210ENST00000596121 ATP2C1P98194 919 aaPredicted RBP12.48□□□□□ -0.41
VRK3-210ENST00000596121 RILPL1Q5EBL4 403 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 TSHZ1Q6ZSZ6 1077 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 KSR1Q8IVT5 923 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 PHOSPHO2Q8TCD6 241 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 PIGOQ8TEQ8 1089 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 CEP170P1Q96L14 293 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 SLC9A7Q96T83 725 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 OSMRQ99650 979 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 DHX33Q9H6R0 707 aaKnown RBP12.48□□□□□ -0.41
VRK3-210ENST00000596121 XPNPEP1Q9NQW7 623 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 CHD7Q9P2D1 2997 aa12.48□□□□□ -0.41
VRK3-210ENST00000596121 LOXHD1Q8IVV2 1947 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 GBF1Q92538 1859 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 MGEA5O60502 916 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 CSDE1O75534 798 aaKnown RBP12.47□□□□□ -0.41
VRK3-210ENST00000596121 CDC25AP30304 524 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 KCNJ6P48051 423 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 CRYBB1P53674 252 aaPredicted RBP12.47□□□□□ -0.41
VRK3-210ENST00000596121 GRIN2CQ14957 1233 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 XKR9Q5GH70 373 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 FAM117BQ6P1L5 589 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 FAM228AQ86W67 206 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 IGSF22Q8N9C0 903 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 SPRYD3Q8NCJ5 442 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 TMEM143Q96AN5 459 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 TIFAQ96CG3 184 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 MMTAG2Q9BU76 263 aaKnown RBP12.47□□□□□ -0.41
VRK3-210ENST00000596121 POLR3CQ9BUI4 534 aaPredicted RBP12.47□□□□□ -0.41
VRK3-210ENST00000596121 ERVK-5Q9HDB9 667 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 SUCLA2Q9P2R7 463 aaPredicted RBP12.47□□□□□ -0.41
VRK3-210ENST00000596121 AKT3Q9Y243 479 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 PCDHA11Q9Y5I1 949 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 SQORQ9Y6N5 450 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 MICAL3Q7RTP6 2002 aa12.47□□□□□ -0.41
VRK3-210ENST00000596121 DKC1O60832 514 aaKnown RBP eCLIP12.46□□□□□ -0.41
VRK3-210ENST00000596121 GJB5O95377 273 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 RPLP2P05387 115 aaKnown RBP12.46□□□□□ -0.41
VRK3-210ENST00000596121 CA3P07451 260 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 PDCP20941 246 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 FGFR4P22455 802 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 RPA1P27694 616 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 PRPHP41219 470 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 RARRES1P49788 294 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 GRIN1Q05586 938 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 PDIA5Q14554 519 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 RAB30Q15771 203 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 ZNF697Q5TEC3 545 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 POTEGQ6S5H5 508 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 BRAPQ7Z569 592 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 HSCBQ8IWL3 235 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 CRIPAKQ8N1N5 446 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 NEK9Q8TD19 979 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 APBB2Q92870 758 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 TOP1MTQ969P6 601 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 MAP7D2Q96T17 732 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 ZNF576Q9H609 170 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 TUFT1Q9NNX1 390 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 ANKEF1Q9NU02 776 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 LRWD1Q9UFC0 647 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 MSRAQ9UJ68 235 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 ST3GAL5Q9UNP4 418 aa12.46□□□□□ -0.41
VRK3-210ENST00000596121 A0A087WZ62 844 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 M0QZ92 97 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 STX6O43752 255 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 EFCAB14O75071 495 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 RPS6KA5O75582 802 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 AMHP03971 560 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 DARSP14868 501 aaKnown RBP12.45□□□□□ -0.42
VRK3-210ENST00000596121 TMOD1P28289 359 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 HTRA4P83105 476 aaPredicted RBP12.45□□□□□ -0.42
VRK3-210ENST00000596121 TAP1Q03518 808 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 NFX1Q12986 1120 aaKnown RBP12.45□□□□□ -0.42
VRK3-210ENST00000596121 PAK2Q13177 524 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 EMC2Q15006 297 aa12.45□□□□□ -0.42
VRK3-210ENST00000596121 DTHD1Q6ZMT9 781 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms