RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ATP2A2P16615 1042 aaKnown RBP16.79■□□□□ 0.28
UPF1-202ENST00000594243 RPA1P27694 616 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 RFC5P40937 340 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 CLCN3P51790 818 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 CRYBB1P53674 252 aaPredicted RBP16.79■□□□□ 0.28
UPF1-202ENST00000594243 POLGP54098 1239 aaPredicted RBP16.79■□□□□ 0.28
UPF1-202ENST00000594243 NPEPPSP55786 919 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 LPIN1Q14693 890 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 XKR9Q5GH70 373 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 ARL6IP4Q66PJ3 421 aaKnown RBP16.79■□□□□ 0.28
UPF1-202ENST00000594243 PLA2G4FQ68DD2 849 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 LRRC71Q8N4P6 559 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 IGSF22Q8N9C0 903 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 NACC1Q96RE7 527 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 MTMR6Q9Y217 621 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 GINS2Q9Y248 185 aa16.79■□□□□ 0.28
UPF1-202ENST00000594243 GAS2O43903 313 aaKnown RBP16.78■□□□□ 0.28
UPF1-202ENST00000594243 VTNP04004 478 aa16.78■□□□□ 0.28
UPF1-202ENST00000594243 NLRP11P59045 1033 aaKnown RBP16.78■□□□□ 0.28
UPF1-202ENST00000594243 WDR5P61964 334 aaKnown RBP16.78■□□□□ 0.28
UPF1-202ENST00000594243 RESTQ13127 1097 aa16.78■□□□□ 0.28
UPF1-202ENST00000594243 CCDC43Q96MW1 224 aaKnown RBP16.78■□□□□ 0.28
UPF1-202ENST00000594243 OSBPL7Q9BZF2 842 aa16.78■□□□□ 0.28
UPF1-202ENST00000594243 DHX33Q9H6R0 707 aaKnown RBP16.78■□□□□ 0.28
UPF1-202ENST00000594243 MSRAQ9UJ68 235 aa16.78■□□□□ 0.28
UPF1-202ENST00000594243 WDR81Q562E7 1941 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 ZBTB39O15060 712 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 GPR32O75388 356 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 MED24O75448 989 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 AMHP03971 560 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 CCT6AP40227 531 aaKnown RBP16.77■□□□□ 0.28
UPF1-202ENST00000594243 SF3A1Q15459 793 aaKnown RBP16.77■□□□□ 0.28
UPF1-202ENST00000594243 RAB30Q15771 203 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 KIZQ2M2Z5 673 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 TCTN1Q2MV58 587 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 KRT79Q5XKE5 535 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 ZNF579Q8NAF0 562 aaKnown RBP16.77■□□□□ 0.28
UPF1-202ENST00000594243 SPRYD3Q8NCJ5 442 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 PIGOQ8TEQ8 1089 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 TCP11Q8WWU5 503 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 FTHL17Q9BXU8 183 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 CDHR5Q9HBB8 845 aa16.77■□□□□ 0.28
UPF1-202ENST00000594243 GRXCR1A8MXD5 290 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 GPR182O15218 404 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 RPS6KA5O75582 802 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 DGAT1O75907 488 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 CD52P31358 61 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 RARRES1P49788 294 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 GPC3P51654 580 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 PAK2Q13177 524 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 MKRN4PQ13434 485 aaPredicted RBP16.76■□□□□ 0.27
UPF1-202ENST00000594243 BECN1Q14457 450 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 IL17AQ16552 155 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 FAM109BQ6ICB4 259 aaPredicted RBP16.76■□□□□ 0.27
UPF1-202ENST00000594243 OSMRQ99650 979 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 MTRQ99707 1265 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 PBX4Q9BYU1 374 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 AGO3Q9H9G7 860 aaKnown RBP16.76■□□□□ 0.27
UPF1-202ENST00000594243 SUCLA2Q9P2R7 463 aaPredicted RBP16.76■□□□□ 0.27
UPF1-202ENST00000594243 DBR1Q9UK59 544 aaKnown RBP16.76■□□□□ 0.27
UPF1-202ENST00000594243 PADI3Q9ULW8 664 aa16.76■□□□□ 0.27
UPF1-202ENST00000594243 TMEM265A0A087WTH1 108 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 VWA3AA6NCI4 1184 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 ASAP2O43150 1006 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 NFX1Q12986 1120 aaKnown RBP16.75■□□□□ 0.27
UPF1-202ENST00000594243 DRP2Q13474 957 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 RHPN2Q8IUC4 686 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 HERC6Q8IVU3 1022 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 SNX29Q8TEQ0 813 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 NLRP7Q8WX94 980 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 AK8Q96MA6 479 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 SCLT1Q96NL6 688 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 PPP1R16BQ96T49 567 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 ZBED2Q9BTP6 218 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 INO80BQ9C086 356 aaPredicted RBP16.75■□□□□ 0.27
UPF1-202ENST00000594243 ADAMTS10Q9H324 1103 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 NOC2LQ9Y3T9 749 aaKnown RBP16.75■□□□□ 0.27
UPF1-202ENST00000594243 PCDHA11Q9Y5I1 949 aa16.75■□□□□ 0.27
UPF1-202ENST00000594243 ENPP3O14638 875 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 EIF4BP23588 611 aaKnown RBP16.74■□□□□ 0.27
UPF1-202ENST00000594243 DNAJB2P25686 324 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 DEFB103AP81534 67 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 EMC2Q15006 297 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 ZNF697Q5TEC3 545 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 POTEGQ6S5H5 508 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.74■□□□□ 0.27
UPF1-202ENST00000594243 ZNF410Q86VK4 478 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 KCTD17Q8N5Z5 321 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 TMEM40Q8WWA1 233 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 PSPC1Q8WXF1 523 aaKnown RBP16.74■□□□□ 0.27
UPF1-202ENST00000594243 TIFAQ96CG3 184 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 GCOM2Q9BZD3 368 aaPredicted RBP16.74■□□□□ 0.27
UPF1-202ENST00000594243 ATP6V0A4Q9HBG4 840 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 ST3GAL5Q9UNP4 418 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 KIAA1024Q9UPX6 916 aa16.74■□□□□ 0.27
UPF1-202ENST00000594243 A0A087WWV3 80 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.73■□□□□ 0.27
UPF1-202ENST00000594243 TLL1O43897 1013 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 LONP1P36776 959 aaKnown RBP16.73■□□□□ 0.27
UPF1-202ENST00000594243 PBX2P40425 430 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms