RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 JRKLQ9Y4A0 524 aa21.59■■□□□ 1.05
CLIP3-206ENST00000593074 MYH11P35749 1972 aa21.58■■□□□ 1.05
CLIP3-206ENST00000593074 HIP1RO75146 1068 aa21.58■■□□□ 1.05
CLIP3-206ENST00000593074 LYPLA2O95372 231 aa21.58■■□□□ 1.05
CLIP3-206ENST00000593074 UCHL3P15374 230 aa21.58■■□□□ 1.05
CLIP3-206ENST00000593074 SLC9A1P19634 815 aa21.58■■□□□ 1.05
CLIP3-206ENST00000593074 PRKG1Q13976 671 aa21.58■■□□□ 1.05
CLIP3-206ENST00000593074 KLHDC7AQ5VTJ3 777 aa21.58■■□□□ 1.05
CLIP3-206ENST00000593074 MLXIPQ9HAP2 919 aa21.58■■□□□ 1.05
CLIP3-206ENST00000593074 RIPK3Q9Y572 518 aa21.58■■□□□ 1.05
CLIP3-206ENST00000593074 USP2O75604 605 aaPredicted RBP21.57■■□□□ 1.04
CLIP3-206ENST00000593074 SEC31AO94979 1220 aaKnown RBP21.57■■□□□ 1.04
CLIP3-206ENST00000593074 ACTN1P12814 892 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 PSMC2P35998 433 aaKnown RBP21.57■■□□□ 1.04
CLIP3-206ENST00000593074 ARHGEF16Q5VV41 709 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 PADI6Q6TGC4 694 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 CATSPERGQ6ZRH7 1159 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 HS2ST1Q7LGA3 356 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 FAM186BQ8IYM0 893 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 NOA1Q8NC60 698 aaKnown RBP21.57■■□□□ 1.04
CLIP3-206ENST00000593074 REPS2Q8NFH8 660 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.57■■□□□ 1.04
CLIP3-206ENST00000593074 PDCD2LQ9BRP1 358 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 IKZF4Q9H2S9 585 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 ARFGAP3Q9NP61 516 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 PXMP2Q9NR77 195 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 DMAC2Q9NW81 257 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 AFG3L2Q9Y4W6 797 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 PCDHB13Q9Y5F0 798 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 MYCLP12524 364 aaPredicted RBP21.57■■□□□ 1.04
CLIP3-206ENST00000593074 CKAP4Q07065 602 aaKnown RBP21.57■■□□□ 1.04
CLIP3-206ENST00000593074 ASIC2Q16515 512 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 SLC18A3Q16572 532 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 GBP6Q6ZN66 633 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 SMAP1Q8IYB5 467 aaPredicted RBP21.57■■□□□ 1.04
CLIP3-206ENST00000593074 FAM133AQ8N9E0 248 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 AGPAT3Q9NRZ7 376 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 ADARB2Q9NS39 739 aaKnown RBP21.57■■□□□ 1.04
CLIP3-206ENST00000593074 PHIPQ8WWQ0 1821 aa21.57■■□□□ 1.04
CLIP3-206ENST00000593074 PPP1R12BO60237 982 aaPredicted RBP21.56■■□□□ 1.04
CLIP3-206ENST00000593074 MOCS3O95396 460 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 QARSP47897 775 aaKnown RBP21.56■■□□□ 1.04
CLIP3-206ENST00000593074 BAATQ14032 418 aaPredicted RBP21.56■■□□□ 1.04
CLIP3-206ENST00000593074 TCERG1LQ5VWI1 586 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 SNRNP48Q6IEG0 339 aaKnown RBP21.56■■□□□ 1.04
CLIP3-206ENST00000593074 GOLGA5Q8TBA6 731 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 HNRNPLLQ8WVV9 542 aaKnown RBP21.56■■□□□ 1.04
CLIP3-206ENST00000593074 RPGRIP1Q96KN7 1286 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 ALS2CR12Q96Q35 445 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 PNKPQ96T60 521 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 GBP3Q9H0R5 595 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 SIX2Q9NPC8 291 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 SSC5DA1L4H1 1573 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 SRGAP2O75044 1071 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 TBC1D8O95759 1140 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 RARRES1P49788 294 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 KLHL30Q0D2K2 578 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 KSR1Q8IVT5 923 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 RNF10Q8N5U6 811 aaKnown RBP21.56■■□□□ 1.04
CLIP3-206ENST00000593074 MMS19Q96T76 1030 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 LUC7LQ9NQ29 371 aaKnown RBP21.56■■□□□ 1.04
CLIP3-206ENST00000593074 HOXC10Q9NYD6 342 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 SALL4Q9UJQ4 1053 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 SNX12Q9UMY4 172 aa21.56■■□□□ 1.04
CLIP3-206ENST00000593074 COL11A1P12107 1806 aaPredicted RBP21.55■■□□□ 1.04
CLIP3-206ENST00000593074 MAPTP10636 758 aaKnown RBP21.55■■□□□ 1.04
CLIP3-206ENST00000593074 XRRA1Q6P2D8 792 aa21.55■■□□□ 1.04
CLIP3-206ENST00000593074 SLC9A9Q8IVB4 645 aa21.55■■□□□ 1.04
CLIP3-206ENST00000593074 DCPSQ96C86 337 aaKnown RBP21.55■■□□□ 1.04
CLIP3-206ENST00000593074 RNF181Q9P0P0 153 aa21.55■■□□□ 1.04
CLIP3-206ENST00000593074 GCNT4Q9P109 453 aa21.55■■□□□ 1.04
CLIP3-206ENST00000593074 ZNF214Q9UL59 606 aaPredicted RBP21.55■■□□□ 1.04
CLIP3-206ENST00000593074 DICER1Q9UPY3 1922 aaKnown RBP21.55■■□□□ 1.04
CLIP3-206ENST00000593074 TUBBP07437 444 aa21.54■■□□□ 1.04
CLIP3-206ENST00000593074 PRLRP16471 622 aa21.54■■□□□ 1.04
CLIP3-206ENST00000593074 IRF2BP2Q7Z5L9 587 aa21.54■■□□□ 1.04
CLIP3-206ENST00000593074 RBM46Q8TBY0 533 aaKnown RBP21.54■■□□□ 1.04
CLIP3-206ENST00000593074 SAMM50Q9Y512 469 aa21.54■■□□□ 1.04
CLIP3-206ENST00000593074 BZW2Q9Y6E2 419 aaKnown RBP21.54■■□□□ 1.04
CLIP3-206ENST00000593074 ATP2A1O14983 1001 aa21.54■■□□□ 1.04
CLIP3-206ENST00000593074 JAM2P57087 298 aa21.54■■□□□ 1.04
CLIP3-206ENST00000593074 ALCAMQ13740 583 aa21.54■■□□□ 1.04
CLIP3-206ENST00000593074 MYBPC2Q14324 1141 aa21.54■■□□□ 1.04
CLIP3-206ENST00000593074 TMEM132BQ14DG7 1078 aa21.54■■□□□ 1.04
CLIP3-206ENST00000593074 SPAG5Q96R06 1193 aa21.54■■□□□ 1.04
CLIP3-206ENST00000593074 LARSQ9P2J5 1176 aaKnown RBP21.54■■□□□ 1.04
CLIP3-206ENST00000593074 A0A087X0T9 212 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 RHOXF2BP0C7M4 288 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 FAM228BP0C875 321 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 PRKCIP41743 596 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 JAK3P52333 1124 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 ARID5AQ03989 594 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 SH3D19Q5HYK7 790 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 C4orf19Q8IY42 314 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 TMEM174Q8WUU8 243 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 NOX5Q96PH1 765 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 RHOXF2Q9BQY4 288 aa21.53■■□□□ 1.04
CLIP3-206ENST00000593074 K7ENM7 598 aa21.52■■□□□ 1.04
CLIP3-206ENST00000593074 SASH3O75995 380 aa21.52■■□□□ 1.04
CLIP3-206ENST00000593074 YWHABP31946 246 aaKnown RBP21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms