RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 SLC5A1P13866 664 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 RPS26P62854 115 aaKnown RBP9.49□□□□□ -0.89
SMAD4-209ENST00000589941 CCNA1P78396 465 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 SEPT6Q14141 434 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 TTLL4Q14679 1199 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 NFKBIBQ15653 356 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 DPP9Q86TI2 863 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 SHISA5Q8N114 240 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 TMEM199Q8N511 208 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 GDPD5Q8WTR4 605 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 ARNTL2Q8WYA1 636 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 SEMA6CQ9H3T2 930 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 BICC1Q9H694 974 aaKnown RBP9.49□□□□□ -0.89
SMAD4-209ENST00000589941 UBE2ZQ9H832 354 aaPredicted RBP9.49□□□□□ -0.89
SMAD4-209ENST00000589941 ZBTB21Q9ULJ3 1066 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 ZNF292O60281 2723 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 CHD6Q8TD26 2715 aa9.49□□□□□ -0.89
SMAD4-209ENST00000589941 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.48□□□□□ -0.89
SMAD4-209ENST00000589941 FAM95CA0A1B0GW59 222 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 PHKA1P46020 1223 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 IRX6P78412 446 aaPredicted RBP9.48□□□□□ -0.89
SMAD4-209ENST00000589941 TAP1Q03518 808 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 INPP5AQ14642 412 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 CCSAPQ6IQ19 270 aaPredicted RBP9.48□□□□□ -0.89
SMAD4-209ENST00000589941 CCDC174Q6PII3 467 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 RNF180Q86T96 592 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 C12orf40Q86WS4 652 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 DZIP1Q86YF9 867 aaKnown RBP9.48□□□□□ -0.89
SMAD4-209ENST00000589941 FAM126BQ8IXS8 530 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 FAM9BQ8IZU0 186 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 PHC3Q8NDX5 983 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 MAML3Q96JK9 1138 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 MOV10L1Q9BXT6 1211 aaKnown RBP9.48□□□□□ -0.89
SMAD4-209ENST00000589941 BACH2Q9BYV9 841 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 WNT8AQ9H1J5 351 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 ATXN3LQ9H3M9 355 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 FAM186AA6NE01 2351 aa9.48□□□□□ -0.89
SMAD4-209ENST00000589941 NCOR2Q9Y618 2525 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 C19orf81C9J6K1 198 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 DYNC1LI2O43237 492 aaPredicted RBP9.47□□□□□ -0.89
SMAD4-209ENST00000589941 ADCY6O43306 1168 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 IGLV1-40P01703 118 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 FGBP02675 491 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 IFIT1P09914 478 aaKnown RBP9.47□□□□□ -0.89
SMAD4-209ENST00000589941 NBPF7P0C2Y1 421 aaPredicted RBP9.47□□□□□ -0.89
SMAD4-209ENST00000589941 VCAM1P19320 739 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 CDK7P50613 346 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 TWISTNBQ3B726 338 aaPredicted RBP9.47□□□□□ -0.89
SMAD4-209ENST00000589941 PPM1JQ5JR12 505 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 RNF43Q68DV7 783 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 LRFN4Q6PJG9 635 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 COPRSQ9NQ92 184 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 SLC4A7Q9Y6M7 1214 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 GVINP1Q7Z2Y8 2422 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 FRYLO94915 3013 aa9.47□□□□□ -0.89
SMAD4-209ENST00000589941 ASNSP08243 561 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 ZNF865P0CJ78 1059 aaPredicted RBP9.46□□□□□ -0.9
SMAD4-209ENST00000589941 ATP2A2P16615 1042 aaKnown RBP9.46□□□□□ -0.9
SMAD4-209ENST00000589941 KCNA5P22460 613 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 ADORA1P30542 326 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 CCL23P55773 120 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 RALBP1Q15311 655 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 KCNA10Q16322 511 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 RABL6Q3YEC7 729 aaPredicted RBP9.46□□□□□ -0.9
SMAD4-209ENST00000589941 LEXMQ3ZCV2 418 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 SCARA3Q6AZY7 606 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 LBX2Q6XYB7 198 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 CATSPERGQ6ZRH7 1159 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 TMEM87AQ8NBN3 555 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 KLHDC9Q8NEP7 349 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 C12orf42Q96LP6 360 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 YIPF2Q9BWQ6 316 aa9.46□□□□□ -0.9
SMAD4-209ENST00000589941 RIF1Q5UIP0 2472 aaKnown RBP9.45□□□□□ -0.9
SMAD4-209ENST00000589941 GPR75-ASB3A0A0A6YYF3 556 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 MED19A0JLT2 244 aaPredicted RBP9.45□□□□□ -0.9
SMAD4-209ENST00000589941 APAF1O14727 1248 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 RECKO95980 971 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 CD4P01730 458 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 RLBP1P12271 317 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 NTF4P34130 210 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 MECOMQ03112 1051 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 ZP2Q05996 745 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 RING1Q06587 406 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 RASGRF1Q13972 1273 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 TMEM67Q5HYA8 995 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 SEZ6L2Q6UXD5 910 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 PLPPR2Q96GM1 343 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 SCLYQ96I15 445 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 MFSD14AQ96MC6 490 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 RSRP1Q9BUV0 290 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 MTIF3Q9H2K0 278 aaKnown RBP9.45□□□□□ -0.9
SMAD4-209ENST00000589941 PIDD1Q9HB75 910 aa9.45□□□□□ -0.9
SMAD4-209ENST00000589941 C9orf78Q9NZ63 289 aaPredicted RBP9.45□□□□□ -0.9
SMAD4-209ENST00000589941 HERC5Q9UII4 1024 aaKnown RBP9.45□□□□□ -0.9
SMAD4-209ENST00000589941 LCTP09848 1927 aa9.44□□□□□ -0.9
SMAD4-209ENST00000589941 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.44□□□□□ -0.9
SMAD4-209ENST00000589941 LCHNA4D1U4 455 aa9.44□□□□□ -0.9
SMAD4-209ENST00000589941 RNGTTO60942 597 aaKnown RBP9.44□□□□□ -0.9
SMAD4-209ENST00000589941 PF4P02776 101 aa9.44□□□□□ -0.9
SMAD4-209ENST00000589941 PGK2P07205 417 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms