RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 SCFD1Q8WVM8 642 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 CRYGNQ8WXF5 182 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 BAP1Q92560 729 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 SPAG5Q96R06 1193 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 CRACR2AQ9BSW2 395 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 LSM14BQ9BX40 385 aaKnown RBP8.12□□□□□ -1.11
ZNF540-206ENST00000589117 KCTD10Q9H3F6 313 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 PDE11AQ9HCR9 933 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 NLRC4Q9NPP4 1024 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 ST7Q9NRC1 585 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 AIPL1Q9NZN9 384 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 HDAC9Q9UKV0 1011 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 PCDHA2Q9Y5H9 948 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 DUSP10Q9Y6W6 482 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 ATRNL1Q5VV63 1379 aa8.12□□□□□ -1.11
ZNF540-206ENST00000589117 SRGAP2O75044 1071 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 MED24O75448 989 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 GH2P01242 217 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 EPB41P11171 864 aaKnown RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 ANXA13P27216 316 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 TNNT3P45378 269 aaPredicted RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 PTK2Q05397 1052 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 GIT2Q14161 759 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 SLC18A3Q16572 532 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 GLYCTKQ8IVS8 523 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 MMGT1Q8N4V1 131 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 FAM160A2Q8N612 972 aaPredicted RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 SMCR8Q8TEV9 937 aaPredicted RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 SLC4A5Q9BY07 1137 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 TUFT1Q9NNX1 390 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 PLCB1Q9NQ66 1216 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 CWC15Q9P013 229 aaKnown RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 ADAM21Q9UKJ8 722 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 RABGAP1Q9Y3P9 1069 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 GCOM1H8Y6P7 765 aaPredicted RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 SLC16A3O15427 465 aaKnown RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 EYA4O95677 639 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 AFPP02771 609 aaKnown RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 PLEKP08567 350 aaPredicted RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 CCNYL3P0C7X3 344 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 POLR2MP0CAP2 368 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 RASSF7Q02833 373 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 RAD51AP2Q09MP3 1159 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 KCNMA1Q12791 1236 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 PABPC4Q13310 644 aaKnown RBP eCLIP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 ASIC2Q16515 512 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 POTEGQ6S5H5 508 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 ZNF572Q7Z3I7 529 aaPredicted RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 ZC3H3Q8IXZ2 948 aaKnown RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 LMBR1Q8WVP7 490 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 GJA10Q969M2 543 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 OSBPL9Q96SU4 736 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 TDRD3Q9H7E2 651 aaKnown RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 TYW1Q9NV66 732 aaKnown RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 EVA1BQ9NVM1 165 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 KCND2Q9NZV8 630 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 SEL1LQ9UBV2 794 aa8.11□□□□□ -1.11
ZNF540-206ENST00000589117 MRPL11Q9Y3B7 192 aaKnown RBP8.11□□□□□ -1.11
ZNF540-206ENST00000589117 MYH4Q9Y623 1939 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 COL2A1P02458 1487 aaPredicted RBP8.1□□□□□ -1.11
ZNF540-206ENST00000589117 ZNF263O14978 683 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 EPHB6O15197 1021 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 FAM13AO94988 1023 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 GDF11O95390 407 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 MOCS3O95396 460 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 CCDC172P0C7W6 258 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 STAT3P40763 770 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 GFPT1Q06210 699 aaPredicted RBP8.1□□□□□ -1.11
ZNF540-206ENST00000589117 SPIRE1Q08AE8 756 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 RAPGEF1Q13905 1077 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 EXOC3L4Q17RC7 722 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 TSNAXIP1Q2TAA8 658 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 ASTE1Q2TB18 679 aaPredicted RBP8.1□□□□□ -1.11
ZNF540-206ENST00000589117 ARSHQ5FYA8 562 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 C9orf131Q5VYM1 1079 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 LEKR1Q6ZMV7 388 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 SH3BP5LQ7L8J4 393 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 CREG2Q8IUH2 290 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 SIAH1Q8IUQ4 282 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 WDR11Q9BZH6 1224 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 BHMT2Q9H2M3 363 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 ZCCHC17Q9NP64 241 aaKnown RBP8.1□□□□□ -1.11
ZNF540-206ENST00000589117 KCNQ5Q9NR82 932 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 OLFML3Q9NRN5 406 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 VPS18Q9P253 973 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 PRR12Q9ULL5 1215 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 TFR2Q9UP52 801 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 DOLKQ9UPQ8 538 aa8.1□□□□□ -1.11
ZNF540-206ENST00000589117 NPHP3-ACAD11A0A0J9YXS1 232 aa8.09□□□□□ -1.11
ZNF540-206ENST00000589117 FAM86B1E9PN63 330 aa8.09□□□□□ -1.11
ZNF540-206ENST00000589117 EIF3DO15371 548 aaKnown RBP eCLIP8.09□□□□□ -1.11
ZNF540-206ENST00000589117 MSH4O15457 936 aa8.09□□□□□ -1.11
ZNF540-206ENST00000589117 FLOT1O75955 427 aa8.09□□□□□ -1.11
ZNF540-206ENST00000589117 GCNT3O95395 438 aa8.09□□□□□ -1.11
ZNF540-206ENST00000589117 FAM86B2P0C5J1 330 aa8.09□□□□□ -1.11
ZNF540-206ENST00000589117 SPATA31C1P0DKV0 1188 aa8.09□□□□□ -1.11
ZNF540-206ENST00000589117 TNIP1Q15025 636 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms