RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 SBK1Q52WX2 424 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 C12orf60Q5U649 245 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 SNRNP48Q6IEG0 339 aaKnown RBP11.76□□□□□ -0.53
SS18-221ENST00000582448 CLEC17AQ6ZS10 378 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 C16orf59Q7L2K0 433 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 KLHDC9Q8NEP7 349 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 PLD4Q96BZ4 506 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 SPC25Q9HBM1 224 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 MSRAQ9UJ68 235 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 ZNF214Q9UL59 606 aaPredicted RBP11.76□□□□□ -0.53
SS18-221ENST00000582448 USTQ9Y2C2 406 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 FNDC3AQ9Y2H6 1198 aaKnown RBP11.76□□□□□ -0.53
SS18-221ENST00000582448 RIPK3Q9Y572 518 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 CDH23Q9H251 3354 aa11.76□□□□□ -0.53
SS18-221ENST00000582448 ZNF236Q9UL36 1845 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 SPTBN5Q9NRC6 3674 aaKnown RBP11.75□□□□□ -0.53
SS18-221ENST00000582448 VPS37CA5D8V6 355 aaPredicted RBP11.75□□□□□ -0.53
SS18-221ENST00000582448 SH2B2O14492 632 aaPredicted RBP11.75□□□□□ -0.53
SS18-221ENST00000582448 TLR3O15455 904 aaKnown RBP11.75□□□□□ -0.53
SS18-221ENST00000582448 DUSP11O75319 330 aaKnown RBP11.75□□□□□ -0.53
SS18-221ENST00000582448 BAG4O95429 457 aaKnown RBP11.75□□□□□ -0.53
SS18-221ENST00000582448 ZSCAN22P10073 491 aaPredicted RBP11.75□□□□□ -0.53
SS18-221ENST00000582448 SYT1P21579 422 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 PDIA3P30101 505 aaKnown RBP11.75□□□□□ -0.53
SS18-221ENST00000582448 CYP2C18P33260 490 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 COPB2P35606 906 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 LIFRP42702 1097 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 ACVR2BQ13705 512 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 WTAPQ15007 396 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 CCDC178Q5BJE1 867 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 CTR9Q6PD62 1173 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 C16orf86Q6ZW13 317 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 IQCA1Q86XH1 822 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 ATXN2LQ8WWM7 1075 aaKnown RBP11.75□□□□□ -0.53
SS18-221ENST00000582448 ASB2Q96Q27 587 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 NKX2-4Q9H2Z4 354 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 THEGQ9P2T0 379 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 TBX21Q9UL17 535 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 SLC12A7Q9Y666 1083 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 NEDD4P46934 1319 aa11.75□□□□□ -0.53
SS18-221ENST00000582448 ZNFX1Q9P2E3 1918 aaKnown RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 A0A0U1RQG5 324 aaPredicted RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 H3BQV1 296 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 ARVCFO00192 962 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 RANBP6O60518 1105 aaKnown RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 ZBED4O75132 1171 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 NCLP19338 710 aaKnown RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 CDK7P50613 346 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 ANTXR2P58335 489 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 MRPS5P82675 430 aaKnown RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 DNM1Q05193 864 aaKnown RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 SCRN1Q12765 414 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 ADGRE1Q14246 886 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 CCDC144BQ3MJ40 725 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 MCTP1Q6DN14 999 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 CCSAPQ6IQ19 270 aaPredicted RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 CYB5R4Q7L1T6 521 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 ANKRD35Q8N283 1001 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 PCSK9Q8NBP7 692 aaKnown RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 REPS2Q8NFH8 660 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 UHRF1Q96T88 793 aaPredicted RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 SLF1Q9BQI6 1058 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 TEX13BQ9BXU2 312 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 MKNK2Q9HBH9 465 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 RAVER2Q9HCJ3 691 aaKnown RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 TMEM63CQ9P1W3 806 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 ISY1Q9ULR0 285 aaKnown RBP11.74□□□□□ -0.53
SS18-221ENST00000582448 MROH7Q68CQ1 1323 aa11.74□□□□□ -0.53
SS18-221ENST00000582448 CCDC196A0A1B0GTZ2 297 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 PTPDC1A2A3K4 754 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 A6NHS1 94 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 ZBTB43O43298 467 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 ORC4O43929 436 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 ELP1O95163 1332 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 FGBP02675 491 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 PDGFAP04085 211 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 SELPP16109 830 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 METAP2P50579 478 aaKnown RBP eCLIP11.73□□□□□ -0.53
SS18-221ENST00000582448 CCL23P55773 120 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 CCT2P78371 535 aaKnown RBP11.73□□□□□ -0.53
SS18-221ENST00000582448 BEX3Q00994 111 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 PKP1Q13835 747 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 PSRC1Q6PGN9 363 aaPredicted RBP11.73□□□□□ -0.53
SS18-221ENST00000582448 OTOP2Q7RTS6 562 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 SGMS1Q86VZ5 419 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 FMR1NBQ8N0W7 255 aaPredicted RBP11.73□□□□□ -0.53
SS18-221ENST00000582448 MSL3Q8N5Y2 521 aaKnown RBP11.73□□□□□ -0.53
SS18-221ENST00000582448 NAV1Q8NEY1 1877 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 FOXD4L4Q8WXT5 416 aaPredicted RBP11.73□□□□□ -0.53
SS18-221ENST00000582448 SYNGAP1Q96PV0 1343 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 SLC28A3Q9HAS3 691 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 ABI2Q9NYB9 513 aaPredicted RBP11.73□□□□□ -0.53
SS18-221ENST00000582448 ZSWIM5Q9P217 1185 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 CLIP2Q9UDT6 1046 aa11.73□□□□□ -0.53
SS18-221ENST00000582448 GOLGA8AA7E2F4 631 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 F5H6K3 240 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 ADCY6O43306 1168 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 NDUFB10O96000 172 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 GHRHP01286 108 aa11.72□□□□□ -0.53
SS18-221ENST00000582448 NPR3P17342 541 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms