RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SMC1BQ8NDV3 1235 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 CACTINQ8WUQ7 758 aaKnown RBP11.62□□□□□ -0.55
SS18-217ENST00000580958 EEF2KMTQ96G04 330 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 KCTD10Q9H3F6 313 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 ZCCHC17Q9NP64 241 aaKnown RBP11.62□□□□□ -0.55
SS18-217ENST00000580958 ZNF302Q9NR11 478 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 OLFML3Q9NRN5 406 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 SEL1LQ9UBV2 794 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 SEPT9Q9UHD8 586 aaPredicted RBP11.62□□□□□ -0.55
SS18-217ENST00000580958 LRRC10BA6NIK2 292 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 FAM155AB1AL88 458 aaPredicted RBP11.61□□□□□ -0.55
SS18-217ENST00000580958 ATP4AP20648 1035 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 MSNP26038 577 aaKnown RBP11.61□□□□□ -0.55
SS18-217ENST00000580958 MAPK4P31152 587 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 PBX1P40424 430 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 MTIF2P46199 727 aaKnown RBP11.61□□□□□ -0.55
SS18-217ENST00000580958 GSDMDP57764 484 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 TBX2Q13207 712 aaPredicted RBP11.61□□□□□ -0.55
SS18-217ENST00000580958 ARMCX5Q6P1M9 558 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 METTL7BQ6UX53 244 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 OTUD6AQ7L8S5 288 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 DPP9Q86TI2 863 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 FAM178BQ8IXR5 827 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 ZNF507Q8TCN5 953 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 COPS5Q92905 334 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 FIZ1Q96SL8 496 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 PCYT2Q99447 389 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 TIPINQ9BVW5 301 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 MLXIPQ9HAP2 919 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 RRAGDQ9NQL2 400 aaPredicted RBP11.61□□□□□ -0.55
SS18-217ENST00000580958 PDGFCQ9NRA1 345 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 ABT1Q9ULW3 272 aaKnown RBP11.61□□□□□ -0.55
SS18-217ENST00000580958 PYCARDQ9ULZ3 195 aa11.61□□□□□ -0.55
SS18-217ENST00000580958 UBE4BO95155 1302 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 ZMYM2Q9UBW7 1377 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 IGKV6D-21A0A0A0MT36 114 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 SLC15A5A6NIM6 579 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 LGALS16A8MUM7 142 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 SNPHO15079 494 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 EIF3DO15371 548 aaKnown RBP eCLIP11.6□□□□□ -0.55
SS18-217ENST00000580958 ECM2O94769 699 aaPredicted RBP11.6□□□□□ -0.55
SS18-217ENST00000580958 PRKCSHP14314 528 aaPredicted RBP11.6□□□□□ -0.55
SS18-217ENST00000580958 GOLGA8FQ08AF8 430 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 GOLGA8DPQ0D2H9 430 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 TTLL4Q14679 1199 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 KNOP1Q1ED39 458 aaKnown RBP11.6□□□□□ -0.55
SS18-217ENST00000580958 MTERF2Q49AM1 385 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 ZC2HC1CQ53FD0 456 aaPredicted RBP11.6□□□□□ -0.55
SS18-217ENST00000580958 XKR3Q5GH77 459 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 ODR4Q5SWX8 454 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 CELF3Q5SZQ8 465 aaKnown RBP11.6□□□□□ -0.55
SS18-217ENST00000580958 TMEM63BQ5T3F8 832 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 FAM102BQ5T8I3 360 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 FAM160B1Q5W0V3 765 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 SPECC1LQ69YQ0 1117 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 CCDC62Q6P9F0 684 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 ZNF720Q7Z2F6 126 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 ZC3H3Q8IXZ2 948 aaKnown RBP11.6□□□□□ -0.55
SS18-217ENST00000580958 CCDC150Q8NCX0 1101 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 SCFD2Q8WU76 684 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 SEPT1Q8WYJ6 367 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 CEP170P1Q96L14 293 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 TUBGCP2Q9BSJ2 902 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 VTA1Q9NP79 307 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 GPRC5CQ9NQ84 441 aa11.6□□□□□ -0.55
SS18-217ENST00000580958 TYW1Q9NV66 732 aaKnown RBP11.6□□□□□ -0.55
SS18-217ENST00000580958 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.6□□□□□ -0.55
SS18-217ENST00000580958 DIS3Q9Y2L1 958 aaKnown RBP11.6□□□□□ -0.55
SS18-217ENST00000580958 MAFBQ9Y5Q3 323 aaPredicted RBP11.6□□□□□ -0.55
SS18-217ENST00000580958 RBM47A0AV96 593 aaKnown RBP11.59□□□□□ -0.55
SS18-217ENST00000580958 TMEM88BA6NKF7 163 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 K7ENM7 598 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 PES1O00541 588 aaKnown RBP11.59□□□□□ -0.55
SS18-217ENST00000580958 PDXKO00764 312 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 NKRFO15226 690 aaKnown RBP eCLIP11.59□□□□□ -0.55
SS18-217ENST00000580958 CALUO43852 315 aaPredicted RBP11.59□□□□□ -0.55
SS18-217ENST00000580958 OATP04181 439 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 TPM2P07951 284 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 TXNP10599 105 aaKnown RBP11.59□□□□□ -0.55
SS18-217ENST00000580958 MAPTP10636 758 aaKnown RBP11.59□□□□□ -0.55
SS18-217ENST00000580958 PLS3P13797 630 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 TCF7P36402 384 aaPredicted RBP11.59□□□□□ -0.55
SS18-217ENST00000580958 FKBP3Q00688 224 aaKnown RBP11.59□□□□□ -0.55
SS18-217ENST00000580958 UBXN1Q04323 297 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 KCNA1Q09470 495 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 EDRF1Q3B7T1 1238 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 CCDC40Q4G0X9 1142 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 TAPT1Q6NXT6 567 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 STXBP4Q6ZWJ1 553 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 KSR1Q8IVT5 923 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 LRRC8AQ8IWT6 810 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 DHX37Q8IY37 1157 aaKnown RBP11.59□□□□□ -0.55
SS18-217ENST00000580958 NPLOC4Q8TAT6 608 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 CCDC102AQ96A19 550 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 DRC1Q96MC2 740 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 CEP63Q96MT8 703 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 ZIC5Q96T25 663 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 GPR20Q99678 358 aa11.59□□□□□ -0.55
SS18-217ENST00000580958 NOC4LQ9BVI4 516 aaKnown RBP11.59□□□□□ -0.55
SS18-217ENST00000580958 CYP26B1Q9NR63 512 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms