RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 EXOC1Q9NV70 894 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 PANK4Q9NVE7 773 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 TRPC6Q9Y210 931 aa17.91■□□□□ 0.46
SS18-211ENST00000578954 BIN1O00499 593 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 GAS2O43903 313 aaKnown RBP17.9■□□□□ 0.46
SS18-211ENST00000578954 MAFO75444 373 aaPredicted RBP17.9■□□□□ 0.46
SS18-211ENST00000578954 MYL3P08590 195 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 PSEN2P49810 448 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 RTP1P59025 263 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 PSMD2Q13200 908 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 MFSD10Q14728 455 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 EMC2Q15006 297 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 COBLL1Q53SF7 1204 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 GNASQ5JWF2 1037 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 ZNF658Q5TYW1 1059 aaPredicted RBP17.9■□□□□ 0.46
SS18-211ENST00000578954 TRMT1LQ7Z2T5 733 aaKnown RBP17.9■□□□□ 0.46
SS18-211ENST00000578954 EXOC8Q8IYI6 725 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 MTG1Q9BT17 334 aaPredicted RBP17.9■□□□□ 0.46
SS18-211ENST00000578954 OLFML3Q9NRN5 406 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 SEL1LQ9UBV2 794 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 PCDHA2Q9Y5H9 948 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 COL4A3BPQ9Y5P4 624 aa17.9■□□□□ 0.46
SS18-211ENST00000578954 RSPH10B2B2RC85 870 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 HIP1RO75146 1068 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 TBCAO75347 108 aaKnown RBP17.89■□□□□ 0.45
SS18-211ENST00000578954 RSPH10BP0C881 870 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 INSRRP14616 1297 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 IDEP14735 1019 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 HOXC8P31273 242 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 CACNB1Q02641 598 aaPredicted RBP17.89■□□□□ 0.45
SS18-211ENST00000578954 LRRC41Q15345 812 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 KIAA0753Q2KHM9 967 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 DPCR1Q3MIW9 517 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 RNF180Q86T96 592 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 MLKLQ8NB16 471 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 PCSK9Q8NBP7 692 aaKnown RBP17.89■□□□□ 0.45
SS18-211ENST00000578954 SLC7A3Q8WY07 619 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 KIFAP3Q92845 792 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 ARMC5Q96C12 935 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 DRC1Q96MC2 740 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 FIZ1Q96SL8 496 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 JPH2Q9BR39 696 aaPredicted RBP17.89■□□□□ 0.45
SS18-211ENST00000578954 TSEN34Q9BSV6 310 aaKnown RBP17.89■□□□□ 0.45
SS18-211ENST00000578954 UNC93B1Q9H1C4 597 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 PARVGQ9HBI0 331 aa17.89■□□□□ 0.45
SS18-211ENST00000578954 FAM13AO94988 1023 aa17.88■□□□□ 0.45
SS18-211ENST00000578954 C22orf31O95567 290 aa17.88■□□□□ 0.45
SS18-211ENST00000578954 CAVIN2O95810 425 aa17.88■□□□□ 0.45
SS18-211ENST00000578954 POLGP54098 1239 aaPredicted RBP17.88■□□□□ 0.45
SS18-211ENST00000578954 RAD51AP2Q09MP3 1159 aa17.88■□□□□ 0.45
SS18-211ENST00000578954 PPFIA1Q13136 1202 aa17.88■□□□□ 0.45
SS18-211ENST00000578954 CT47A1Q5JQC4 288 aaPredicted RBP17.88■□□□□ 0.45
SS18-211ENST00000578954 FAM26FQ5R3K3 315 aa17.88■□□□□ 0.45
SS18-211ENST00000578954 LINC01465Q8N7H1 131 aa17.88■□□□□ 0.45
SS18-211ENST00000578954 KIAA0895Q8NCT3 520 aa17.88■□□□□ 0.45
SS18-211ENST00000578954 TSPY26PQ9H489 355 aa17.88■□□□□ 0.45
SS18-211ENST00000578954 C17orf75Q9HAS0 396 aa17.88■□□□□ 0.45
SS18-211ENST00000578954 MOXD2PA6NHM9 499 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 RRN3P2A6NIE6 340 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 MAGEB2O15479 319 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 CABYRO75952 493 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 SMIM10L2AP0DMW4 78 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 SMIM10L2BP0DMW5 78 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 MAPTP10636 758 aaKnown RBP17.87■□□□□ 0.45
SS18-211ENST00000578954 ADAM17P78536 824 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 TBC1D8BQ0IIM8 1120 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 STK4Q13043 487 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 MTFR1Q15390 333 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 GRIK4Q16099 956 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 KCNA10Q16322 511 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 HERC4Q5GLZ8 1057 aaPredicted RBP17.87■□□□□ 0.45
SS18-211ENST00000578954 SFR1Q86XK3 245 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 KCNN1Q92952 543 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 ZNF333Q96JL9 665 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 PRDM10Q9NQV6 1147 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 GDAQ9Y2T3 454 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 NRCAMQ92823 1304 aa17.87■□□□□ 0.45
SS18-211ENST00000578954 MYH11P35749 1972 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 MBLAC1A4D2B0 266 aaPredicted RBP17.86■□□□□ 0.45
SS18-211ENST00000578954 ASGR1P07306 291 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 CCL5P13501 91 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 PLS3P13797 630 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 ARL2P36404 184 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 PPP1R2P41236 205 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 MARCH8Q5T0T0 291 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 ISM2Q6H9L7 571 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 CXCL17Q6UXB2 119 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 C11orf57Q6ZUT1 292 aaPredicted RBP17.86■□□□□ 0.45
SS18-211ENST00000578954 SESTD1Q86VW0 696 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 TRAPPC12Q8WVT3 735 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 BPIFA3Q9BQP9 254 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 GPRC5CQ9NQ84 441 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 LARSQ9P2J5 1176 aaKnown RBP17.86■□□□□ 0.45
SS18-211ENST00000578954 DACH1Q9UI36 760 aa17.86■□□□□ 0.45
SS18-211ENST00000578954 PPP1R3GB7ZBB8 358 aa17.85■□□□□ 0.45
SS18-211ENST00000578954 MKRN4PQ13434 485 aaPredicted RBP17.85■□□□□ 0.45
SS18-211ENST00000578954 ANO6Q4KMQ2 910 aa17.85■□□□□ 0.45
SS18-211ENST00000578954 FAM102BQ5T8I3 360 aa17.85■□□□□ 0.45
SS18-211ENST00000578954 IER5Q5VY09 327 aa17.85■□□□□ 0.45
SS18-211ENST00000578954 MTHFD1LQ6UB35 978 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms