RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 SEMA6BQ9H3T3 888 aa21.82■■□□□ 1.08
SS18-209ENST00000578595 ZSWIM4Q9H7M6 989 aa21.82■■□□□ 1.08
SS18-209ENST00000578595 MTMR10Q9NXD2 777 aa21.82■■□□□ 1.08
SS18-209ENST00000578595 CA3P07451 260 aa21.81■■□□□ 1.08
SS18-209ENST00000578595 HSP90AA1P07900 732 aaKnown RBP21.81■■□□□ 1.08
SS18-209ENST00000578595 YWHABP31946 246 aaKnown RBP21.81■■□□□ 1.08
SS18-209ENST00000578595 DNM2P50570 870 aa21.81■■□□□ 1.08
SS18-209ENST00000578595 POLGP54098 1239 aaPredicted RBP21.81■■□□□ 1.08
SS18-209ENST00000578595 NPEPPSP55786 919 aa21.81■■□□□ 1.08
SS18-209ENST00000578595 NLRP11P59045 1033 aaKnown RBP21.81■■□□□ 1.08
SS18-209ENST00000578595 NFX1Q12986 1120 aaKnown RBP21.81■■□□□ 1.08
SS18-209ENST00000578595 XKR9Q5GH70 373 aa21.81■■□□□ 1.08
SS18-209ENST00000578595 ANO5Q75V66 913 aa21.81■■□□□ 1.08
SS18-209ENST00000578595 OTUD6AQ7L8S5 288 aa21.81■■□□□ 1.08
SS18-209ENST00000578595 ERMNQ8TAM6 284 aa21.81■■□□□ 1.08
SS18-209ENST00000578595 NEK9Q8TD19 979 aa21.81■■□□□ 1.08
SS18-209ENST00000578595 NIFKQ9BYG3 293 aaKnown RBP21.81■■□□□ 1.08
SS18-209ENST00000578595 AGO3Q9H9G7 860 aaKnown RBP21.81■■□□□ 1.08
SS18-209ENST00000578595 CYP26B1Q9NR63 512 aa21.81■■□□□ 1.08
SS18-209ENST00000578595 WRAP73Q9P2S5 460 aaPredicted RBP21.81■■□□□ 1.08
SS18-209ENST00000578595 PCDHB6Q9Y5E3 794 aa21.81■■□□□ 1.08
SS18-209ENST00000578595 RPS6KA5O75582 802 aa21.8■■□□□ 1.08
SS18-209ENST00000578595 PDCP20941 246 aa21.8■■□□□ 1.08
SS18-209ENST00000578595 C4orf19Q8IY42 314 aa21.8■■□□□ 1.08
SS18-209ENST00000578595 USP38Q8NB14 1042 aa21.8■■□□□ 1.08
SS18-209ENST00000578595 NLRP7Q8WX94 980 aa21.8■■□□□ 1.08
SS18-209ENST00000578595 SLC7A3Q8WY07 619 aa21.8■■□□□ 1.08
SS18-209ENST00000578595 PADI3Q9ULW8 664 aa21.8■■□□□ 1.08
SS18-209ENST00000578595 TTC3P53804 2025 aa21.8■■□□□ 1.08
SS18-209ENST00000578595 KDM3AQ9Y4C1 1321 aa21.8■■□□□ 1.08
SS18-209ENST00000578595 MYH15Q9Y2K3 1946 aa21.79■■□□□ 1.08
SS18-209ENST00000578595 STBD1O95210 358 aa21.79■■□□□ 1.08
SS18-209ENST00000578595 TARBP2Q15633 366 aaKnown RBP21.79■■□□□ 1.08
SS18-209ENST00000578595 RILPL1Q5EBL4 403 aa21.79■■□□□ 1.08
SS18-209ENST00000578595 JPH2Q9BR39 696 aaPredicted RBP21.79■■□□□ 1.08
SS18-209ENST00000578595 CDHR5Q9HBB8 845 aa21.79■■□□□ 1.08
SS18-209ENST00000578595 TOB1P50616 345 aaPredicted RBP21.78■■□□□ 1.08
SS18-209ENST00000578595 PTGDRQ13258 359 aa21.78■■□□□ 1.08
SS18-209ENST00000578595 ODR4Q5SWX8 454 aa21.78■■□□□ 1.08
SS18-209ENST00000578595 FERMT3Q86UX7 667 aa21.78■■□□□ 1.08
SS18-209ENST00000578595 MYLIPQ8WY64 445 aa21.78■■□□□ 1.08
SS18-209ENST00000578595 CERS4Q9HA82 394 aa21.78■■□□□ 1.08
SS18-209ENST00000578595 NOC2LQ9Y3T9 749 aaKnown RBP21.78■■□□□ 1.08
SS18-209ENST00000578595 SQORQ9Y6N5 450 aa21.78■■□□□ 1.08
SS18-209ENST00000578595 COL4A4P53420 1690 aaPredicted RBP21.77■■□□□ 1.08
SS18-209ENST00000578595 SLITRK3O94933 977 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 GJB5O95377 273 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 RFC5P40937 340 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 CRYBB1P53674 252 aaPredicted RBP21.77■■□□□ 1.08
SS18-209ENST00000578595 DRP2Q13474 957 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 RHPN2Q8IUC4 686 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 TMEM40Q8WWA1 233 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 NLRP4Q96MN2 994 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 GUCD1Q96NT3 240 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 YME1L1Q96TA2 773 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 CDX2Q99626 313 aaPredicted RBP21.77■■□□□ 1.08
SS18-209ENST00000578595 FTHL17Q9BXU8 183 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 RAB34Q9BZG1 259 aa21.77■■□□□ 1.08
SS18-209ENST00000578595 SUCLA2Q9P2R7 463 aaPredicted RBP21.77■■□□□ 1.08
SS18-209ENST00000578595 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.76■■□□□ 1.07
SS18-209ENST00000578595 DENND3A2RUS2 1198 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 ZBTB39O15060 712 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 GPR182O15218 404 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 MAFO75444 373 aaPredicted RBP21.76■■□□□ 1.07
SS18-209ENST00000578595 FOSL2P15408 326 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 GRIN2CQ14957 1233 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 HAUS3Q68CZ6 603 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 EXOC8Q8IYI6 725 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 LINC01465Q8N7H1 131 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 ZNF579Q8NAF0 562 aaKnown RBP21.76■■□□□ 1.07
SS18-209ENST00000578595 PIGOQ8TEQ8 1089 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 INTS4Q96HW7 963 aaKnown RBP21.76■■□□□ 1.07
SS18-209ENST00000578595 GAS2L1Q99501 681 aaPredicted RBP21.76■■□□□ 1.07
SS18-209ENST00000578595 PRDM12Q9H4Q4 367 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 LRWD1Q9UFC0 647 aa21.76■■□□□ 1.07
SS18-209ENST00000578595 A0A087WWV3 80 aa21.75■■□□□ 1.07
SS18-209ENST00000578595 GPR32O75388 356 aa21.75■■□□□ 1.07
SS18-209ENST00000578595 CCT6AP40227 531 aaKnown RBP21.75■■□□□ 1.07
SS18-209ENST00000578595 GPC3P51654 580 aa21.75■■□□□ 1.07
SS18-209ENST00000578595 EMC2Q15006 297 aa21.75■■□□□ 1.07
SS18-209ENST00000578595 RAD9AQ99638 391 aa21.75■■□□□ 1.07
SS18-209ENST00000578595 MTRQ99707 1265 aa21.75■■□□□ 1.07
SS18-209ENST00000578595 HSD17B14Q9BPX1 270 aa21.75■■□□□ 1.07
SS18-209ENST00000578595 TUFT1Q9NNX1 390 aa21.75■■□□□ 1.07
SS18-209ENST00000578595 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.75■■□□□ 1.07
SS18-209ENST00000578595 ST3GAL5Q9UNP4 418 aa21.75■■□□□ 1.07
SS18-209ENST00000578595 RALGAPA2Q2PPJ7 1873 aa21.75■■□□□ 1.07
SS18-209ENST00000578595 MYH11P35749 1972 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 LCHNA4D1U4 455 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 LAD1O00515 517 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 MED24O75448 989 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 POTEGQ6S5H5 508 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 DTHD1Q6ZMT9 781 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 BRAPQ7Z569 592 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 FAM228AQ86W67 206 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 SNX29Q8TEQ0 813 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 ARNTL2Q8WYA1 636 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 SNX21Q969T3 373 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 TMEM143Q96AN5 459 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 CEP89Q96ST8 783 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms