RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 NDUFS2O75306 463 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ALDH1A2O94788 518 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 IFNB1P01574 187 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CD4P01730 458 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 FGBP02675 491 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CKMP06732 381 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CD58P19256 250 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 GNG11P61952 73 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 PLD1Q13393 1074 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 UBE2SQ16763 222 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ZMYM1Q5SVZ6 1142 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 NBPF12Q5TAG4 269 aaPredicted RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 PPP1R18Q6NYC8 613 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CYFIP1Q7L576 1253 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 RAB44Q7Z6P3 723 aaPredicted RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 SPATA24Q86W54 205 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 NOSTRINQ8IVI9 506 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 NEDD1Q8NHV4 660 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 LARP4BQ92615 738 aaKnown RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ATG4CQ96DT6 458 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 NMRK2Q9NPI5 230 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 RIC8AQ9NPQ8 531 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ASIC3Q9UHC3 531 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 DBNLQ9UJU6 430 aaKnown RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 SCAF8Q9UPN6 1271 aaKnown RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 NCKAP1Q9Y2A7 1128 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ARHGEF5Q12774 1597 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ZMYM6O95789 1325 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 FLT1P17948 1338 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 MYO1FO00160 1098 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 PRPSAP2O60256 369 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 OPA1O60313 960 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 IVLP07476 585 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ADD1P35611 737 aaKnown RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 SOX5P35711 763 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 EVCP57679 992 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 HERVK_113P62684 666 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 RPL10AP62906 217 aaKnown RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CTTNQ14247 550 aaKnown RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 MAPRE1Q15691 268 aaKnown RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 QRICH1Q2TAL8 776 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ZNF697Q5TEC3 545 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 LMBRD2Q68DH5 695 aaPredicted RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 FAM83AQ86UY5 434 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ZNF34Q8IZ26 560 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 FBXO22Q8NEZ5 403 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CDKL2Q92772 493 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 PBXIP1Q96AQ6 731 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ZNF653Q96CK0 615 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ZNF668Q96K58 619 aaPredicted RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 FOPNLQ96NB1 174 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 TMEM47Q9BQJ4 181 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 VPS16Q9H269 839 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 SERTAD1Q9UHV2 236 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 SLC13A4Q9UKG4 626 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 DCCP43146 1447 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CYP2D7A0A087X1C5 515 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ZC3H11AO75152 810 aaKnown RBP eCLIP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 GNRH1P01148 92 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 HMGCRP04035 888 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CAP2P40123 477 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 MXI1P50539 228 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 SATB1Q01826 763 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 MYL5Q02045 173 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 PPIL2Q13356 520 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 THOC5Q13769 683 aaKnown RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 ARHGEF7Q14155 803 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 PPM1LQ5SGD2 360 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 SCARA5Q6ZMJ2 495 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 FAM186BQ8IYM0 893 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 DNAAF3Q8N9W5 541 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 IFT43Q96FT9 208 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CEP95Q96GE4 821 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CENPKQ9BS16 269 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 PCIF1Q9H4Z3 704 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 DCP1AQ9NPI6 582 aaPredicted RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 CICQ96RK0 1608 aaPredicted RBP3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 DNMT1P26358 1616 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 MEIS1O00470 390 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 ZNF197O14709 1029 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 MOCS2O96007 188 aaPredicted RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PRKCBP05771 671 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PRR29P0C7W0 189 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 HSPA1AP0DMV8 641 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 HSPA1BP0DMV9 641 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 MYL4P12829 197 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 AKR1B1P15121 316 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 DNAJB2P25686 324 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 HOXA7P31268 230 aaPredicted RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 IFNA8P32881 189 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 GARSP41250 739 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 MAGEA1P43355 309 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 AP3M2P53677 418 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 DNM1Q05193 864 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PTPN12Q05209 780 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 FAM160A1Q05DH4 1040 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 TMEM132DQ14C87 1099 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 RAB30Q15771 203 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PHKG1Q16816 387 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 ZNF699Q32M78 642 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms