RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 DCHS1Q96JQ0 3298 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 DENND3A2RUS2 1198 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 TMEM221A6NGB7 291 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 ZBTB42B2RXF5 422 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 M0R296 226 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 RPS6KA5O75582 802 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 DEXIO95424 95 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 C22orf31O95567 290 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 ATP4AP20648 1035 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 USP11P51784 963 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 RTN4RL1Q86UN2 441 aaPredicted RBP15.48■□□□□ 0.07
CCDC40-216ENST00000576241 SUGP1Q8IWZ8 645 aaKnown RBP15.48■□□□□ 0.07
CCDC40-216ENST00000576241 METTL13Q8N6R0 699 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 LENG9Q96B70 501 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 ZNF274Q96GC6 653 aaPredicted RBP15.48■□□□□ 0.07
CCDC40-216ENST00000576241 PLVAPQ9BX97 442 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 TM6SF1Q9BZW5 370 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 PLXNA3P51805 1871 aa15.48■□□□□ 0.07
CCDC40-216ENST00000576241 MYO15AQ9UKN7 3530 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 GPR182O15218 404 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 NCK2O43639 380 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 GAS7O60861 476 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 LINC00271P0C7V0 271 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 IBSPP21815 317 aaPredicted RBP15.47■□□□□ 0.07
CCDC40-216ENST00000576241 KIZQ2M2Z5 673 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 PAN2Q504Q3 1202 aaKnown RBP15.47■□□□□ 0.07
CCDC40-216ENST00000576241 TRIM67Q6ZTA4 783 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 ATOH1Q92858 354 aaPredicted RBP15.47■□□□□ 0.07
CCDC40-216ENST00000576241 RIT2Q99578 217 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 TEKT3Q9BXF9 490 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 TMX1Q9H3N1 280 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 ERVK-5Q9HDB9 667 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 DISC1Q9NRI5 854 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 PDRG1Q9NUG6 133 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 PCDHA4Q9UN74 947 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 NOC2LQ9Y3T9 749 aaKnown RBP15.47■□□□□ 0.07
CCDC40-216ENST00000576241 PCDHB7Q9Y5E2 793 aa15.47■□□□□ 0.07
CCDC40-216ENST00000576241 MRPL42Q9Y6G3 142 aaKnown RBP15.47■□□□□ 0.07
CCDC40-216ENST00000576241 FAM186AA6NE01 2351 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 GRM6O15303 877 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 MSH4O15457 936 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 MAGEB2O15479 319 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 CHMP2AO43633 222 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 VTNP04004 478 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 TMOD1P28289 359 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 SFNP31947 248 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 SARSP49591 514 aaKnown RBP15.46■□□□□ 0.07
CCDC40-216ENST00000576241 JAK3P52333 1124 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 CRYBB1P53674 252 aaPredicted RBP15.46■□□□□ 0.07
CCDC40-216ENST00000576241 STK3Q13188 491 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 COL19A1Q14993 1142 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 LRCH2Q5VUJ6 765 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 FAM177A1Q8N128 213 aaPredicted RBP15.46■□□□□ 0.07
CCDC40-216ENST00000576241 CRIPAKQ8N1N5 446 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 TBCKQ8TEA7 893 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 MAP7D2Q96T17 732 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 PPP1R16BQ96T49 567 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 OSMRQ99650 979 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 ADAM2Q99965 735 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 LARP6Q9BRS8 491 aaKnown RBP15.46■□□□□ 0.07
CCDC40-216ENST00000576241 CDHR5Q9HBB8 845 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 C1orf112Q9NSG2 853 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 NRBP2Q9NSY0 501 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 ST3GAL5Q9UNP4 418 aa15.46■□□□□ 0.07
CCDC40-216ENST00000576241 RALGAPA2Q2PPJ7 1873 aa15.46■□□□□ 0.06
CCDC40-216ENST00000576241 MYO7AQ13402 2215 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 CSPG5O95196 566 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 MMP1P03956 469 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 OATP04181 439 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 PRKCEQ02156 737 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 SMAD2Q15796 467 aaKnown RBP15.45■□□□□ 0.06
CCDC40-216ENST00000576241 NAALADL2Q58DX5 795 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 GALNT17Q6IS24 598 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 BLIDQ8IZY5 108 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 FBXL6Q8N531 539 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 TMEM40Q8WWA1 233 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 SLC5A5Q92911 643 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 P2RX5Q93086 422 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 PPP2R3CQ969Q6 453 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 POP1Q99575 1024 aaKnown RBP15.45■□□□□ 0.06
CCDC40-216ENST00000576241 RGS18Q9NS28 235 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 CLDND1Q9NY35 253 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 AKT3Q9Y243 479 aa15.45■□□□□ 0.06
CCDC40-216ENST00000576241 TTC3P53804 2025 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 MGEA5O60502 916 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 CDKL5O76039 1030 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 LTBRP36941 435 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 CLCN3P51790 818 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 CLUL1Q15846 466 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 Q4G0T1 1027 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 SPOUT1Q5T280 376 aaKnown RBP15.44■□□□□ 0.06
CCDC40-216ENST00000576241 EFCAB12Q6NXP0 572 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 SLC24A5Q71RS6 500 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 ASCL5Q7RTU5 278 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 ZNF710Q8N1W2 664 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 DAGLBQ8NCG7 672 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 RDM1Q8NG50 284 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 UNC45AQ9H3U1 944 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 PLAGL2Q9UPG8 496 aa15.44■□□□□ 0.06
CCDC40-216ENST00000576241 NLRC5Q86WI3 1866 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms