RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 DENND3A2RUS2 1198 aa17.08■□□□□ 0.32
SMG6-220ENST00000576218 RBAK-RBAKDNI3L0D1 243 aa17.08■□□□□ 0.32
SMG6-220ENST00000576218 WNT7AO00755 349 aa17.08■□□□□ 0.32
SMG6-220ENST00000576218 IGFBP4P22692 258 aa17.08■□□□□ 0.32
SMG6-220ENST00000576218 POLGP54098 1239 aaPredicted RBP17.08■□□□□ 0.32
SMG6-220ENST00000576218 EXOC8Q8IYI6 725 aa17.08■□□□□ 0.32
SMG6-220ENST00000576218 ERMNQ8TAM6 284 aa17.08■□□□□ 0.32
SMG6-220ENST00000576218 NEK9Q8TD19 979 aa17.08■□□□□ 0.32
SMG6-220ENST00000576218 EIF2AK1Q9BQI3 630 aaKnown RBP17.08■□□□□ 0.32
SMG6-220ENST00000576218 NIFKQ9BYG3 293 aaKnown RBP17.08■□□□□ 0.32
SMG6-220ENST00000576218 RGL1Q9NZL6 768 aa17.08■□□□□ 0.32
SMG6-220ENST00000576218 PADI3Q9ULW8 664 aa17.08■□□□□ 0.32
SMG6-220ENST00000576218 INSL6Q9Y581 213 aa17.08■□□□□ 0.32
SMG6-220ENST00000576218 POTEMA6NI47 508 aa17.07■□□□□ 0.32
SMG6-220ENST00000576218 GPR182O15218 404 aa17.07■□□□□ 0.32
SMG6-220ENST00000576218 YWHABP31946 246 aaKnown RBP17.07■□□□□ 0.32
SMG6-220ENST00000576218 CRYBB1P53674 252 aaPredicted RBP17.07■□□□□ 0.32
SMG6-220ENST00000576218 NLRP11P59045 1033 aaKnown RBP17.07■□□□□ 0.32
SMG6-220ENST00000576218 XKR9Q5GH70 373 aa17.07■□□□□ 0.32
SMG6-220ENST00000576218 LARP1BQ659C4 914 aaKnown RBP17.07■□□□□ 0.32
SMG6-220ENST00000576218 ZNF710Q8N1W2 664 aa17.07■□□□□ 0.32
SMG6-220ENST00000576218 ARNTL2Q8WYA1 636 aa17.07■□□□□ 0.32
SMG6-220ENST00000576218 ZNF668Q96K58 619 aaPredicted RBP17.07■□□□□ 0.32
SMG6-220ENST00000576218 TMEM60Q9H2L4 133 aa17.07■□□□□ 0.32
SMG6-220ENST00000576218 AGO3Q9H9G7 860 aaKnown RBP17.07■□□□□ 0.32
SMG6-220ENST00000576218 CYP26B1Q9NR63 512 aa17.07■□□□□ 0.32
SMG6-220ENST00000576218 BMP2KQ9NSY1 1161 aaPredicted RBP17.07■□□□□ 0.32
SMG6-220ENST00000576218 LRFN2Q9ULH4 789 aa17.07■□□□□ 0.32
SMG6-220ENST00000576218 MICAL3Q7RTP6 2002 aa17.07■□□□□ 0.32
SMG6-220ENST00000576218 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.06■□□□□ 0.32
SMG6-220ENST00000576218 U2AF2P26368 475 aaKnown RBP eCLIP17.06■□□□□ 0.32
SMG6-220ENST00000576218 TECP42680 631 aa17.06■□□□□ 0.32
SMG6-220ENST00000576218 SPIRE1Q08AE8 756 aa17.06■□□□□ 0.32
SMG6-220ENST00000576218 ANO5Q75V66 913 aa17.06■□□□□ 0.32
SMG6-220ENST00000576218 C4orf19Q8IY42 314 aa17.06■□□□□ 0.32
SMG6-220ENST00000576218 MAFAQ8NHW3 353 aaPredicted RBP17.06■□□□□ 0.32
SMG6-220ENST00000576218 RAB34Q9BZG1 259 aa17.06■□□□□ 0.32
SMG6-220ENST00000576218 MTUS1Q9ULD2 1270 aa17.06■□□□□ 0.32
SMG6-220ENST00000576218 NOC2LQ9Y3T9 749 aaKnown RBP17.06■□□□□ 0.32
SMG6-220ENST00000576218 SIP14410 1827 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 EVPLQ92817 2033 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 LCHNA4D1U4 455 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 STAG3L1P0CL83 205 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 RFC5P40937 340 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 NPEPPSP55786 919 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 CDC42EP1Q00587 391 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 NBR1Q14596 966 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 TARBP2Q15633 366 aaKnown RBP17.05■□□□□ 0.32
SMG6-220ENST00000576218 RHPN2Q8IUC4 686 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 MICALL1Q8N3F8 863 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 TOP1MTQ969P6 601 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 MTMR9Q96QG7 549 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 CDHR5Q9HBB8 845 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 SUCLA2Q9P2R7 463 aaPredicted RBP17.05■□□□□ 0.32
SMG6-220ENST00000576218 ST3GAL5Q9UNP4 418 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 PPME1Q9Y570 386 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 WDR81Q562E7 1941 aa17.05■□□□□ 0.32
SMG6-220ENST00000576218 VPS37CA5D8V6 355 aaPredicted RBP17.04■□□□□ 0.32
SMG6-220ENST00000576218 ENPP3O14638 875 aa17.04■□□□□ 0.32
SMG6-220ENST00000576218 GTPBP6O43824 516 aaPredicted RBP17.04■□□□□ 0.32
SMG6-220ENST00000576218 GPR32O75388 356 aa17.04■□□□□ 0.32
SMG6-220ENST00000576218 MAFO75444 373 aaPredicted RBP17.04■□□□□ 0.32
SMG6-220ENST00000576218 ZSCAN20P17040 1043 aaPredicted RBP17.04■□□□□ 0.32
SMG6-220ENST00000576218 PDCP20941 246 aa17.04■□□□□ 0.32
SMG6-220ENST00000576218 GPC3P51654 580 aa17.04■□□□□ 0.32
SMG6-220ENST00000576218 TAP1Q03518 808 aa17.04■□□□□ 0.32
SMG6-220ENST00000576218 RILPL1Q5EBL4 403 aa17.04■□□□□ 0.32
SMG6-220ENST00000576218 HAUS3Q68CZ6 603 aa17.04■□□□□ 0.32
SMG6-220ENST00000576218 TMEM40Q8WWA1 233 aa17.04■□□□□ 0.32
SMG6-220ENST00000576218 PPM1EQ8WY54 764 aa17.04■□□□□ 0.32
SMG6-220ENST00000576218 NLRP4Q96MN2 994 aa17.04■□□□□ 0.32
SMG6-220ENST00000576218 TGS1Q96RS0 853 aaKnown RBP17.04■□□□□ 0.32
SMG6-220ENST00000576218 GCOM2Q9BZD3 368 aaPredicted RBP17.04■□□□□ 0.32
SMG6-220ENST00000576218 RNF216Q9NWF9 866 aaPredicted RBP17.04■□□□□ 0.32
SMG6-220ENST00000576218 WRAP73Q9P2S5 460 aaPredicted RBP17.04■□□□□ 0.32
SMG6-220ENST00000576218 STBD1O95210 358 aa17.03■□□□□ 0.32
SMG6-220ENST00000576218 HSP90AA1P07900 732 aaKnown RBP17.03■□□□□ 0.32
SMG6-220ENST00000576218 EMC2Q15006 297 aa17.03■□□□□ 0.32
SMG6-220ENST00000576218 HSCBQ8IWL3 235 aa17.03■□□□□ 0.32
SMG6-220ENST00000576218 LINC01465Q8N7H1 131 aa17.03■□□□□ 0.32
SMG6-220ENST00000576218 PSPC1Q8WXF1 523 aaKnown RBP17.03■□□□□ 0.32
SMG6-220ENST00000576218 MTRQ99707 1265 aa17.03■□□□□ 0.32
SMG6-220ENST00000576218 ADAM2Q99965 735 aa17.03■□□□□ 0.32
SMG6-220ENST00000576218 ERVK-5Q9HDB9 667 aa17.03■□□□□ 0.32
SMG6-220ENST00000576218 PCDHB6Q9Y5E3 794 aa17.03■□□□□ 0.32
SMG6-220ENST00000576218 PTPRSQ13332 1948 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 LINC01553A4QN01 128 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 K7ELQ4 463 aaPredicted RBP17.02■□□□□ 0.32
SMG6-220ENST00000576218 GAS2O43903 313 aaKnown RBP17.02■□□□□ 0.32
SMG6-220ENST00000576218 SLITRK3O94933 977 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 SFPQP23246 707 aaKnown RBP eCLIP17.02■□□□□ 0.32
SMG6-220ENST00000576218 EIF4BP23588 611 aaKnown RBP17.02■□□□□ 0.32
SMG6-220ENST00000576218 PTGDRQ13258 359 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 MKRN4PQ13434 485 aaPredicted RBP17.02■□□□□ 0.32
SMG6-220ENST00000576218 DRP2Q13474 957 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 ZNF410Q86VK4 478 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 FAM228AQ86W67 206 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 NPAS4Q8IUM7 802 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 FIBCD1Q8N539 461 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 TCP11Q8WWU5 503 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms