RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 MYH10P35580 1976 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 LOC102724159A0A0B4J2E5 919 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 ERICH4A6NGS2 130 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 ICAM1P05362 532 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 KCNA3P22001 575 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 HOXD11P31277 338 aaPredicted RBP11.03□□□□□ -0.64
VPS53-220ENST00000576149 TNNT3P45378 269 aaPredicted RBP11.03□□□□□ -0.64
VPS53-220ENST00000576149 PWP2Q15269 919 aaKnown RBP11.03□□□□□ -0.64
VPS53-220ENST00000576149 MEI1Q5TIA1 1274 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 FAM186BQ8IYM0 893 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 AENQ8WTP8 325 aaKnown RBP11.03□□□□□ -0.64
VPS53-220ENST00000576149 HDAC7Q8WUI4 952 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 CCDC102AQ96A19 550 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 ZBED3Q96IU2 234 aaPredicted RBP11.03□□□□□ -0.64
VPS53-220ENST00000576149 MKNK1Q9BUB5 465 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 VPS33BQ9H267 617 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 IKZF4Q9H2S9 585 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 GCNT4Q9P109 453 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 DMGDHQ9UI17 866 aaKnown RBP11.03□□□□□ -0.64
VPS53-220ENST00000576149 HPCAL4Q9UM19 191 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 FAN1Q9Y2M0 1017 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 ZNF536O15090 1300 aa11.02□□□□□ -0.64
VPS53-220ENST00000576149 FTCDO95954 541 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 GUCY2CP25092 1073 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 ANXA13P27216 316 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 STXBP4Q6ZWJ1 553 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 FAM178BQ8IXR5 827 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 AGBL1Q96MI9 1066 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 LXNQ9BS40 222 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 SELENOOQ9BVL4 669 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 DMAC2Q9NW81 257 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 NAGPAQ9UK23 515 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 AJAP1Q9UKB5 411 aaPredicted RBP11.02□□□□□ -0.65
VPS53-220ENST00000576149 ZNRF3Q9ULT6 936 aa11.02□□□□□ -0.65
VPS53-220ENST00000576149 ZC3H4Q9UPT8 1303 aaKnown RBP11.02□□□□□ -0.65
VPS53-220ENST00000576149 GOLGB1Q14789 3259 aaKnown RBP11.02□□□□□ -0.65
VPS53-220ENST00000576149 CCDC66A2RUB6 948 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 GRID2IPA4D2P6 1211 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 PPP1R12BO60237 982 aaPredicted RBP11.01□□□□□ -0.65
VPS53-220ENST00000576149 BCRP11274 1271 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 ITGB5P18084 799 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 INPP5BP32019 993 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 MATR3P43243 847 aaKnown RBP eCLIP11.01□□□□□ -0.65
VPS53-220ENST00000576149 COG2Q14746 738 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 GSPT2Q8IYD1 628 aaKnown RBP11.01□□□□□ -0.65
VPS53-220ENST00000576149 NEK9Q8TD19 979 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 ZBTB9Q96C00 473 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 MS4A14Q96JA4 679 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 PDGFDQ9GZP0 370 aaPredicted RBP11.01□□□□□ -0.65
VPS53-220ENST00000576149 RBM12Q9NTZ6 932 aaKnown RBP11.01□□□□□ -0.65
VPS53-220ENST00000576149 CCPG1Q9ULG6 757 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 NENFQ9UMX5 172 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 ATP8B3O60423 1300 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 RPTORQ8N122 1335 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 WNT10BO00744 389 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 SYF2O95926 243 aaKnown RBP11.01□□□□□ -0.65
VPS53-220ENST00000576149 DPEP1P16444 411 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 GLE1Q53GS7 698 aaKnown RBP11.01□□□□□ -0.65
VPS53-220ENST00000576149 ODR4Q5SWX8 454 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 ALKBH5Q6P6C2 394 aaKnown RBP11.01□□□□□ -0.65
VPS53-220ENST00000576149 HS2ST1Q7LGA3 356 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 KSR1Q8IVT5 923 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 NIM1KQ8IY84 436 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 BANK1Q8NDB2 785 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 STRA6Q9BX79 667 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 AGPAT3Q9NRZ7 376 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 COL20A1Q9P218 1284 aa11.01□□□□□ -0.65
VPS53-220ENST00000576149 ARHGEF35A5YM69 484 aa11□□□□□ -0.65
VPS53-220ENST00000576149 PHF20L1A8MW92 1017 aa11□□□□□ -0.65
VPS53-220ENST00000576149 FLOT1O75955 427 aa11□□□□□ -0.65
VPS53-220ENST00000576149 GHRHRQ02643 423 aa11□□□□□ -0.65
VPS53-220ENST00000576149 MAPK7Q13164 816 aa11□□□□□ -0.65
VPS53-220ENST00000576149 NBPF9Q3BBW0 867 aa11□□□□□ -0.65
VPS53-220ENST00000576149 GJB7Q6PEY0 223 aa11□□□□□ -0.65
VPS53-220ENST00000576149 DAW1Q8N136 415 aa11□□□□□ -0.65
VPS53-220ENST00000576149 PRPF38AQ8NAV1 312 aaKnown RBP11□□□□□ -0.65
VPS53-220ENST00000576149 CLEC4DQ8WXI8 215 aa11□□□□□ -0.65
VPS53-220ENST00000576149 GDAP1L1Q96MZ0 367 aa11□□□□□ -0.65
VPS53-220ENST00000576149 ZNF341Q9BYN7 854 aa11□□□□□ -0.65
VPS53-220ENST00000576149 KCNH7Q9NS40 1196 aa11□□□□□ -0.65
VPS53-220ENST00000576149 STIM2Q9P246 746 aa11□□□□□ -0.65
VPS53-220ENST00000576149 NFIBO00712 420 aa11□□□□□ -0.65
VPS53-220ENST00000576149 DHX15O43143 795 aaKnown RBP11□□□□□ -0.65
VPS53-220ENST00000576149 HIP1RO75146 1068 aa11□□□□□ -0.65
VPS53-220ENST00000576149 PPP1R37O75864 691 aa11□□□□□ -0.65
VPS53-220ENST00000576149 FERP16591 822 aa11□□□□□ -0.65
VPS53-220ENST00000576149 TNFRSF8P28908 595 aa11□□□□□ -0.65
VPS53-220ENST00000576149 FMO5P49326 533 aa11□□□□□ -0.65
VPS53-220ENST00000576149 SLC7A5Q01650 507 aa11□□□□□ -0.65
VPS53-220ENST00000576149 CXCL9Q07325 125 aa11□□□□□ -0.65
VPS53-220ENST00000576149 TMCO4Q5TGY1 634 aa11□□□□□ -0.65
VPS53-220ENST00000576149 NIPA1Q7RTP0 329 aa11□□□□□ -0.65
VPS53-220ENST00000576149 VPS36Q86VN1 386 aa11□□□□□ -0.65
VPS53-220ENST00000576149 GOLGA5Q8TBA6 731 aa11□□□□□ -0.65
VPS53-220ENST00000576149 INPP4AQ96PE3 977 aaPredicted RBP11□□□□□ -0.65
VPS53-220ENST00000576149 HINFPQ9BQA5 517 aa11□□□□□ -0.65
VPS53-220ENST00000576149 FRMD4BQ9Y2L6 1034 aa11□□□□□ -0.65
VPS53-220ENST00000576149 DDX39AO00148 427 aaKnown RBP10.99□□□□□ -0.65
VPS53-220ENST00000576149 CES2O00748 559 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 WDR46O15213 610 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms