RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 TDHQ8IZJ6 230 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 LINC01465Q8N7H1 131 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 ZNF579Q8NAF0 562 aaKnown RBP10.66□□□□□ -0.7
CCDC40-214ENST00000575431 MCPH1Q8NEM0 835 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 KCNG4Q8TDN1 519 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 FOXD4L4Q8WXT5 416 aaPredicted RBP10.66□□□□□ -0.7
CCDC40-214ENST00000575431 APBB2Q92870 758 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 SCLYQ96I15 445 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 CCSER1Q9C0I3 900 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 PRO3102Q9H379 93 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 CCDC39Q9UFE4 941 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 FBXO2Q9UK22 296 aaPredicted RBP10.66□□□□□ -0.7
CCDC40-214ENST00000575431 CIZ1Q9ULV3 898 aaPredicted RBP10.66□□□□□ -0.7
CCDC40-214ENST00000575431 KIAA1024Q9UPX6 916 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 CDY2AQ9Y6F7 541 aa10.66□□□□□ -0.7
CCDC40-214ENST00000575431 BRCA2P51587 3418 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 ABHD14A-ACY1A0A1B0GW23 586 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 ARHGEF35A5YM69 484 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 EYA4O95677 639 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 CHRNA1P02708 482 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 MARCKSP29966 332 aaPredicted RBP10.65□□□□□ -0.7
CCDC40-214ENST00000575431 DDIT3P35638 169 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 CRYBB1P53674 252 aaPredicted RBP10.65□□□□□ -0.7
CCDC40-214ENST00000575431 MGAT3Q09327 533 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 MXD4Q14582 209 aaPredicted RBP10.65□□□□□ -0.7
CCDC40-214ENST00000575431 CNKSR3Q6P9H4 555 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 POTEGQ6S5H5 508 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 ZNF410Q86VK4 478 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 RASSF8Q8NHQ8 419 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 PIGOQ8TEQ8 1089 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 PSPC1Q8WXF1 523 aaKnown RBP10.65□□□□□ -0.7
CCDC40-214ENST00000575431 SEPT8Q92599 483 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 MTRQ99707 1265 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 MMTAG2Q9BU76 263 aaKnown RBP10.65□□□□□ -0.7
CCDC40-214ENST00000575431 INO80BQ9C086 356 aaPredicted RBP10.65□□□□□ -0.7
CCDC40-214ENST00000575431 FTOQ9C0B1 505 aaKnown RBP eCLIP10.65□□□□□ -0.7
CCDC40-214ENST00000575431 SCAND2PQ9GZW5 306 aaPredicted RBP10.65□□□□□ -0.7
CCDC40-214ENST00000575431 ATP6V0A4Q9HBG4 840 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 DDX19AQ9NUU7 478 aaKnown RBP10.65□□□□□ -0.7
CCDC40-214ENST00000575431 TFIP11Q9UBB9 837 aaKnown RBP10.65□□□□□ -0.7
CCDC40-214ENST00000575431 AKT3Q9Y243 479 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 ZDHHC9Q9Y397 364 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 PDE4DIPQ5VU43 2346 aa10.65□□□□□ -0.7
CCDC40-214ENST00000575431 ARID2Q68CP9 1835 aa10.65□□□□□ -0.71
CCDC40-214ENST00000575431 TMEM150BA6NC51 233 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 PP2D1A8MPX8 630 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 ZBTB39O15060 712 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 CUTAO60888 179 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 NBNO60934 754 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 CTSHP09668 335 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 CYP11B2P19099 503 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 CDC25AP30304 524 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 CLCN3P51790 818 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 DNM1Q05193 864 aaKnown RBP10.64□□□□□ -0.71
CCDC40-214ENST00000575431 POU5F1BQ06416 359 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 IKBKEQ14164 716 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 TFDP1Q14186 410 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 EMC2Q15006 297 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 PLEKHG4Q58EX7 1191 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 FBXO47Q5MNV8 452 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 TMEM240Q5SV17 173 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 TSHZ1Q6ZSZ6 1077 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 ZNF365Q70YC5 407 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 C16orf59Q7L2K0 433 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 DEFB128Q7Z7B8 93 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 LRRC71Q8N4P6 559 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 HERVK_113Q902F9 699 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 ZBTB10Q96DT7 871 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.64□□□□□ -0.71
CCDC40-214ENST00000575431 SH2D3AQ9BRG2 576 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 TIPINQ9BVW5 301 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 FTHL17Q9BXU8 183 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 CSRNP2Q9H175 543 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 BHMT2Q9H2M3 363 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 KCND2Q9NZV8 630 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 SUCLA2Q9P2R7 463 aaPredicted RBP10.64□□□□□ -0.71
CCDC40-214ENST00000575431 KCNG1Q9UIX4 513 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 RCOR1Q9UKL0 485 aa10.64□□□□□ -0.71
CCDC40-214ENST00000575431 COLQQ9Y215 455 aaPredicted RBP10.64□□□□□ -0.71
CCDC40-214ENST00000575431 EVPLQ92817 2033 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 GPR182O15218 404 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 GPR32O75388 356 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 ACRP10323 421 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 EIF4BP23588 611 aaKnown RBP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 GPC3P51654 580 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 EPHB4P54760 987 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 NLRP11P59045 1033 aaKnown RBP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 TMEM62Q0P6H9 643 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 GRB10Q13322 594 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 MKRN4PQ13434 485 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 MBTPS1Q14703 1052 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 GPNMBQ14956 572 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 PCBP1Q15365 356 aaKnown RBP eCLIP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 SHHQ15465 462 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 ZRSR1Q15695 479 aaKnown RBP10.63□□□□□ -0.71
CCDC40-214ENST00000575431 ECM1Q16610 540 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 TMEM119Q4V9L6 283 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 PADI6Q6TGC4 694 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 CCDC73Q6ZRK6 1079 aa10.63□□□□□ -0.71
CCDC40-214ENST00000575431 RHPN2Q8IUC4 686 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms