RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TMEM161AQ9NX61 479 aa18.87■□□□□ 0.61
VPS53-218ENST00000575207 RALGAPA1Q6GYQ0 2036 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 KDM3AQ9Y4C1 1321 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.86■□□□□ 0.61
VPS53-218ENST00000575207 M0QZ92 97 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 HSD17B4P51659 736 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 FAM189BP81408 668 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 NEDD9Q14511 834 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 STOX1Q6ZVD7 989 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 PPFIBP1Q86W92 1011 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 TMEM57Q8N5G2 664 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 TMEM87AQ8NBN3 555 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 CLDN23Q96B33 292 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 KIF12Q96FN5 646 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 CASD1Q96PB1 797 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 ADAM2Q99965 735 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 ADAM33Q9BZ11 813 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 ZBP1Q9H171 429 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 ATP6V0A4Q9HBG4 840 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 WDR6Q9NNW5 1121 aaKnown RBP18.86■□□□□ 0.61
VPS53-218ENST00000575207 ANKFY1Q9P2R3 1169 aa18.86■□□□□ 0.61
VPS53-218ENST00000575207 MRPL11Q9Y3B7 192 aaKnown RBP18.86■□□□□ 0.61
VPS53-218ENST00000575207 FAM170BA6NMN3 283 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 ANHXE9PGG2 379 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 TDGF1P13385 188 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 CA8P35219 290 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 PRKCQQ04759 706 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 PGM5Q15124 567 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 CYFIP1Q7L576 1253 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 IL31RAQ8NI17 732 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 MYADMQ96S97 322 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 RHOBTB2Q9BYZ6 727 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 CELF4Q9BZC1 486 aaKnown RBP18.85■□□□□ 0.61
VPS53-218ENST00000575207 NACAP1Q9BZK3 213 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 FAM49AQ9H0Q0 323 aaPredicted RBP18.85■□□□□ 0.61
VPS53-218ENST00000575207 TELO2Q9Y4R8 837 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 FREM2Q5SZK8 3169 aa18.85■□□□□ 0.61
VPS53-218ENST00000575207 NRLP54845 237 aa18.84■□□□□ 0.61
VPS53-218ENST00000575207 NFX1Q12986 1120 aaKnown RBP18.84■□□□□ 0.61
VPS53-218ENST00000575207 UBXN2BQ14CS0 331 aa18.84■□□□□ 0.61
VPS53-218ENST00000575207 CDC37Q16543 378 aaPredicted RBP18.84■□□□□ 0.61
VPS53-218ENST00000575207 TMEM266Q2M3C6 531 aa18.84■□□□□ 0.61
VPS53-218ENST00000575207 CEP85Q6P2H3 762 aa18.84■□□□□ 0.61
VPS53-218ENST00000575207 RSPO2Q6UXX9 243 aaPredicted RBP18.84■□□□□ 0.61
VPS53-218ENST00000575207 PRR23BQ6ZRT6 265 aa18.84■□□□□ 0.61
VPS53-218ENST00000575207 LRRC43Q8N309 656 aa18.84■□□□□ 0.61
VPS53-218ENST00000575207 CMASQ8NFW8 434 aaPredicted RBP18.84■□□□□ 0.61
VPS53-218ENST00000575207 ZCCHC14Q8WYQ9 949 aaKnown RBP18.84■□□□□ 0.61
VPS53-218ENST00000575207 KIF1BPQ96EK5 621 aa18.84■□□□□ 0.61
VPS53-218ENST00000575207 DENND3A2RUS2 1198 aa18.83■□□□□ 0.6
VPS53-218ENST00000575207 CFBP00751 764 aa18.83■□□□□ 0.6
VPS53-218ENST00000575207 CTSAP10619 480 aa18.83■□□□□ 0.6
VPS53-218ENST00000575207 RPS9P46781 194 aaKnown RBP18.83■□□□□ 0.6
VPS53-218ENST00000575207 RBM25P49756 843 aaKnown RBP18.83■□□□□ 0.6
VPS53-218ENST00000575207 SNW1Q13573 536 aaKnown RBP18.83■□□□□ 0.6
VPS53-218ENST00000575207 HTR4Q13639 388 aa18.83■□□□□ 0.6
VPS53-218ENST00000575207 CYP26C1Q6V0L0 522 aa18.83■□□□□ 0.6
VPS53-218ENST00000575207 VPS52Q8N1B4 723 aa18.83■□□□□ 0.6
VPS53-218ENST00000575207 AUTS2Q8WXX7 1259 aa18.83■□□□□ 0.6
VPS53-218ENST00000575207 BBXQ8WY36 941 aaPredicted RBP18.83■□□□□ 0.6
VPS53-218ENST00000575207 LSM14BQ9BX40 385 aaKnown RBP18.83■□□□□ 0.6
VPS53-218ENST00000575207 LTB4R2Q9NPC1 389 aa18.83■□□□□ 0.6
VPS53-218ENST00000575207 MAP3K20Q9NYL2 800 aaKnown RBP18.83■□□□□ 0.6
VPS53-218ENST00000575207 OPLAHO14841 1288 aa18.82■□□□□ 0.6
VPS53-218ENST00000575207 RANBP6O60518 1105 aaKnown RBP18.82■□□□□ 0.6
VPS53-218ENST00000575207 GPC5P78333 572 aa18.82■□□□□ 0.6
VPS53-218ENST00000575207 TMEM62Q0P6H9 643 aa18.82■□□□□ 0.6
VPS53-218ENST00000575207 WTAPQ15007 396 aa18.82■□□□□ 0.6
VPS53-218ENST00000575207 MLF2Q15773 248 aaPredicted RBP18.82■□□□□ 0.6
VPS53-218ENST00000575207 ZBTB41Q5SVQ8 909 aa18.82■□□□□ 0.6
VPS53-218ENST00000575207 GPATCH4Q5T3I0 446 aaKnown RBP18.82■□□□□ 0.6
VPS53-218ENST00000575207 FRAT1Q92837 279 aaPredicted RBP18.82■□□□□ 0.6
VPS53-218ENST00000575207 ZFP91Q96JP5 570 aaPredicted RBP18.82■□□□□ 0.6
VPS53-218ENST00000575207 NAPBQ9H115 298 aa18.82■□□□□ 0.6
VPS53-218ENST00000575207 RNF19AQ9NV58 838 aa18.82■□□□□ 0.6
VPS53-218ENST00000575207 CLUHO75153 1309 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 SPDYE4A6NLX3 237 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 SPATA31C2B4DYI2 1134 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 HOXA2O43364 376 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 LAMP2P13473 410 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 CCND2P30279 289 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 POLGP54098 1239 aaPredicted RBP18.81■□□□□ 0.6
VPS53-218ENST00000575207 ZBTB10Q96DT7 871 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 KLHL5Q96PQ7 755 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 UBA5Q9GZZ9 404 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 BCL11AQ9H165 835 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 CPVLQ9H3G5 476 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 NUMBLQ9Y6R0 609 aa18.81■□□□□ 0.6
VPS53-218ENST00000575207 M0R2C6 588 aa18.8■□□□□ 0.6
VPS53-218ENST00000575207 CLCN4P51793 760 aa18.8■□□□□ 0.6
VPS53-218ENST00000575207 SEMA3FQ13275 785 aa18.8■□□□□ 0.6
VPS53-218ENST00000575207 SLC44A4Q53GD3 710 aa18.8■□□□□ 0.6
VPS53-218ENST00000575207 TMEM169Q96HH4 297 aa18.8■□□□□ 0.6
VPS53-218ENST00000575207 TCP11L1Q9NUJ3 509 aa18.8■□□□□ 0.6
VPS53-218ENST00000575207 ERAP1Q9NZ08 941 aa18.8■□□□□ 0.6
VPS53-218ENST00000575207 LAMA1P25391 3075 aa18.8■□□□□ 0.6
VPS53-218ENST00000575207 COL4A3Q01955 1670 aa18.79■□□□□ 0.6
VPS53-218ENST00000575207 RRN3P2A6NIE6 340 aa18.79■□□□□ 0.6
VPS53-218ENST00000575207 ORC4O43929 436 aa18.79■□□□□ 0.6
VPS53-218ENST00000575207 KRT76Q01546 638 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms