RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 RPA1P27694 616 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 FAM186BQ8IYM0 893 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 ETNPPLQ8TBG4 499 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 SIX2Q9NPC8 291 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 KDM4FA0A1W2PPD8 638 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 TMEM110-MUSTN1A8MSY1 372 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 SPIRE1Q08AE8 756 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 MCTP2Q6DN12 878 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 RUFY4Q6ZNE9 571 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 NT5DC3Q86UY8 548 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 SPICE1Q8N0Z3 855 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 SLC35G2Q8TBE7 412 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 CNOT8Q9UFF9 292 aaKnown RBP18.59■□□□□ 0.57
VPS53-215ENST00000573028 CHORDC1Q9UHD1 332 aaPredicted RBP18.59■□□□□ 0.57
VPS53-215ENST00000573028 PPP1R9AQ9ULJ8 1098 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 EML1O00423 815 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 BBOX1O75936 387 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 LNX1Q8TBB1 728 aaPredicted RBP18.59■□□□□ 0.57
VPS53-215ENST00000573028 MDM1Q8TC05 714 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 GLG1Q92896 1179 aa18.59■□□□□ 0.57
VPS53-215ENST00000573028 CDK5RAP2Q96SN8 1893 aa18.58■□□□□ 0.57
VPS53-215ENST00000573028 GOLGA6L7A0A1B0GV03 622 aa18.58■□□□□ 0.57
VPS53-215ENST00000573028 H0YGN5 161 aa18.58■□□□□ 0.57
VPS53-215ENST00000573028 DRAP1Q14919 205 aaPredicted RBP18.58■□□□□ 0.57
VPS53-215ENST00000573028 GPATCH11Q8N954 259 aa18.58■□□□□ 0.57
VPS53-215ENST00000573028 CTNNBL1Q8WYA6 563 aaPredicted RBP18.58■□□□□ 0.57
VPS53-215ENST00000573028 METTL14Q9HCE5 456 aaKnown RBP18.58■□□□□ 0.57
VPS53-215ENST00000573028 DNAJC12Q9UKB3 198 aa18.58■□□□□ 0.57
VPS53-215ENST00000573028 NFS1Q9Y697 457 aa18.58■□□□□ 0.57
VPS53-215ENST00000573028 GMNCA6NCL1 334 aa18.58■□□□□ 0.56
VPS53-215ENST00000573028 MSH4O15457 936 aa18.58■□□□□ 0.56
VPS53-215ENST00000573028 KRT13P13646 458 aa18.58■□□□□ 0.56
VPS53-215ENST00000573028 QPCTQ16769 361 aa18.58■□□□□ 0.56
VPS53-215ENST00000573028 CERKLQ49MI3 558 aaPredicted RBP18.58■□□□□ 0.56
VPS53-215ENST00000573028 CCDC121Q6ZUS5 278 aa18.58■□□□□ 0.56
VPS53-215ENST00000573028 MAEAQ7L5Y9 396 aa18.58■□□□□ 0.56
VPS53-215ENST00000573028 KIAA0825Q8IV33 1275 aa18.58■□□□□ 0.56
VPS53-215ENST00000573028 TMOD4Q9NZQ9 345 aa18.58■□□□□ 0.56
VPS53-215ENST00000573028 IGSF9BQ9UPX0 1349 aa18.58■□□□□ 0.56
VPS53-215ENST00000573028 CCDC188H7C350 402 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 TRMT1LQ7Z2T5 733 aaKnown RBP18.57■□□□□ 0.56
VPS53-215ENST00000573028 ZC3H3Q8IXZ2 948 aaKnown RBP18.57■□□□□ 0.56
VPS53-215ENST00000573028 SYCE1Q8N0S2 351 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 CABS1Q96KC9 395 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 CALR3Q96L12 384 aaKnown RBP18.57■□□□□ 0.56
VPS53-215ENST00000573028 EIF2AK1Q9BQI3 630 aaKnown RBP18.57■□□□□ 0.56
VPS53-215ENST00000573028 AMNQ9BXJ7 453 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 BTNL10A8MVZ5 291 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 FERP16591 822 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 PRKCIP41743 596 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 LLGL1Q15334 1064 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 AADACL2Q6P093 401 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 LRIG3Q6UXM1 1119 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 FBXO11Q86XK2 927 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 CCDC114Q96M63 670 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 DNAJC18Q9H819 358 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 PHF20L1A8MW92 1017 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 PPP1R12BO60237 982 aaPredicted RBP18.57■□□□□ 0.56
VPS53-215ENST00000573028 PPP2R2AP63151 447 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 SETQ01105 290 aaPredicted RBP18.57■□□□□ 0.56
VPS53-215ENST00000573028 EPM2AIP1Q7L775 607 aaPredicted RBP18.57■□□□□ 0.56
VPS53-215ENST00000573028 TMC3Q7Z5M5 1100 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 TAS2R14Q9NYV8 317 aa18.57■□□□□ 0.56
VPS53-215ENST00000573028 SUCLA2Q9P2R7 463 aaPredicted RBP18.57■□□□□ 0.56
VPS53-215ENST00000573028 TGFB1I1O43294 461 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 PLTPP55058 493 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 ICA1Q05084 483 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 CPLX4Q7Z7G2 160 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 TEKT1Q969V4 418 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 ARHGEF26Q96DR7 871 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 KCNQ5Q9NR82 932 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 LRRC4BQ9NT99 713 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 CES2O00748 559 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 USP8P40818 1118 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 CRY2Q49AN0 593 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 SPATS2Q86XZ4 545 aaKnown RBP18.56■□□□□ 0.56
VPS53-215ENST00000573028 PALB2Q86YC2 1186 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 LENG9Q96B70 501 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 FMO2Q99518 471 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 GLT8D2Q9H1C3 349 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 SNX24Q9Y343 169 aa18.56■□□□□ 0.56
VPS53-215ENST00000573028 F5H6K3 240 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 GYS1P13807 737 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 TNFAIP3P21580 790 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 FNTAP49354 379 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 KLRC3Q07444 240 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 MTMR3Q13615 1198 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 SUGP1Q8IWZ8 645 aaKnown RBP18.55■□□□□ 0.56
VPS53-215ENST00000573028 SELENOSQ9BQE4 189 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 DDX20Q9UHI6 824 aaKnown RBP18.55■□□□□ 0.56
VPS53-215ENST00000573028 CYP3A7-CYP3A51PA0A087WV96 503 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 DDTLA6NHG4 134 aaPredicted RBP18.55■□□□□ 0.56
VPS53-215ENST00000573028 CYP3A7P24462 503 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 SOX5P35711 763 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 PSMC2P35998 433 aaKnown RBP18.55■□□□□ 0.56
VPS53-215ENST00000573028 JAM2P57087 298 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 MKRN4PQ13434 485 aaPredicted RBP18.55■□□□□ 0.56
VPS53-215ENST00000573028 CBWD6Q4V339 395 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 CBWD3Q5JTY5 395 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 CBWD5Q5RIA9 395 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms