RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 IGSF22Q8N9C0 903 aa17.68■□□□□ 0.42
CHD3-215ENST00000572750 ZNF579Q8NAF0 562 aaKnown RBP17.68■□□□□ 0.42
CHD3-215ENST00000572750 ERMNQ8TAM6 284 aa17.68■□□□□ 0.42
CHD3-215ENST00000572750 NECAB3Q96P71 396 aaPredicted RBP17.68■□□□□ 0.42
CHD3-215ENST00000572750 CEP89Q96ST8 783 aa17.68■□□□□ 0.42
CHD3-215ENST00000572750 PPP1R16BQ96T49 567 aa17.68■□□□□ 0.42
CHD3-215ENST00000572750 ZSCAN16Q9H4T2 348 aaPredicted RBP17.68■□□□□ 0.42
CHD3-215ENST00000572750 CYP26B1Q9NR63 512 aa17.68■□□□□ 0.42
CHD3-215ENST00000572750 BMP2KQ9NSY1 1161 aaPredicted RBP17.68■□□□□ 0.42
CHD3-215ENST00000572750 LRWD1Q9UFC0 647 aa17.68■□□□□ 0.42
CHD3-215ENST00000572750 CLIC4Q9Y696 253 aa17.68■□□□□ 0.42
CHD3-215ENST00000572750 CDY2AQ9Y6F7 541 aa17.68■□□□□ 0.42
CHD3-215ENST00000572750 MICAL3Q7RTP6 2002 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 VWA3AA6NCI4 1184 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 VTNP04004 478 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 PFKMP08237 780 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 CEBPZQ03701 1054 aaKnown RBP17.67■□□□□ 0.42
CHD3-215ENST00000572750 TCTN1Q2MV58 587 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 FAM26DQ5JW98 314 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 HAUS3Q68CZ6 603 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 CATSPER3Q86XQ3 398 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 RPUSD2Q8IZ73 545 aaKnown RBP17.67■□□□□ 0.42
CHD3-215ENST00000572750 KIAA0319LQ8IZA0 1049 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 LINC01465Q8N7H1 131 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 PIGOQ8TEQ8 1089 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 CEP170P1Q96L14 293 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 UHRF1Q96T88 793 aaPredicted RBP17.67■□□□□ 0.42
CHD3-215ENST00000572750 RAB34Q9BZG1 259 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 TUFT1Q9NNX1 390 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 GBF1Q92538 1859 aa17.67■□□□□ 0.42
CHD3-215ENST00000572750 A0A087WWV3 80 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 MAGEB2O15479 319 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 LYPLA2O95372 231 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 PARNO95453 639 aaKnown RBP17.66■□□□□ 0.42
CHD3-215ENST00000572750 F13A1P00488 732 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 CXCL10P02778 98 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 RPLP2P05387 115 aaKnown RBP17.66■□□□□ 0.42
CHD3-215ENST00000572750 GHRP10912 638 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 CDC25AP30304 524 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 CCT6AP40227 531 aaKnown RBP17.66■□□□□ 0.42
CHD3-215ENST00000572750 DRP2Q13474 957 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 FOXD4L6Q3SYB3 417 aaPredicted RBP17.66■□□□□ 0.42
CHD3-215ENST00000572750 XKR9Q5GH70 373 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 EFCAB12Q6NXP0 572 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 FOXD4L3Q6VB84 417 aaPredicted RBP17.66■□□□□ 0.42
CHD3-215ENST00000572750 SNX29Q8TEQ0 813 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 ATXN2LQ8WWM7 1075 aaKnown RBP17.66■□□□□ 0.42
CHD3-215ENST00000572750 USP28Q96RU2 1077 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 POLR3CQ9BUI4 534 aaPredicted RBP17.66■□□□□ 0.42
CHD3-215ENST00000572750 SUGCTQ9HAC7 445 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 CXXC1Q9P0U4 656 aaPredicted RBP17.66■□□□□ 0.42
CHD3-215ENST00000572750 AKT3Q9Y243 479 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 GINS2Q9Y248 185 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 TRPV2Q9Y5S1 764 aa17.66■□□□□ 0.42
CHD3-215ENST00000572750 TRANK1O15050 2925 aa17.65■□□□□ 0.42
CHD3-215ENST00000572750 M0QZ92 97 aa17.65■□□□□ 0.42
CHD3-215ENST00000572750 BMP15O95972 392 aa17.65■□□□□ 0.42
CHD3-215ENST00000572750 FGBP02675 491 aa17.65■□□□□ 0.42
CHD3-215ENST00000572750 RPA1P27694 616 aa17.65■□□□□ 0.42
CHD3-215ENST00000572750 POLGP54098 1239 aaPredicted RBP17.65■□□□□ 0.42
CHD3-215ENST00000572750 GRIN1Q05586 938 aa17.65■□□□□ 0.42
CHD3-215ENST00000572750 PTPAQ15257 358 aa17.65■□□□□ 0.42
CHD3-215ENST00000572750 ECM1Q16610 540 aa17.65■□□□□ 0.42
CHD3-215ENST00000572750 ARL6IP4Q66PJ3 421 aaKnown RBP17.65■□□□□ 0.42
CHD3-215ENST00000572750 PPM1EQ8WY54 764 aa17.65■□□□□ 0.42
CHD3-215ENST00000572750 CCDC43Q96MW1 224 aaKnown RBP17.65■□□□□ 0.42
CHD3-215ENST00000572750 MAP7D2Q96T17 732 aa17.65■□□□□ 0.42
CHD3-215ENST00000572750 ZBBXA8MT70 800 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 MAFO75444 373 aaPredicted RBP17.64■□□□□ 0.41
CHD3-215ENST00000572750 MKRN4PQ13434 485 aaPredicted RBP17.64■□□□□ 0.41
CHD3-215ENST00000572750 PDIA5Q14554 519 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 LPIN1Q14693 890 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 EMC2Q15006 297 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 KIZQ2M2Z5 673 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 IER5Q5VY09 327 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 CNKSR3Q6P9H4 555 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 OTUD6AQ7L8S5 288 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 SLC7A3Q8WY07 619 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 HERVK_113Q902F9 699 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 ZNF668Q96K58 619 aaPredicted RBP17.64■□□□□ 0.41
CHD3-215ENST00000572750 WDFY4Q6ZS81 3184 aa17.64■□□□□ 0.41
CHD3-215ENST00000572750 IGKV6-21A0A0C4DH24 114 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 DNAJB2P25686 324 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 TMOD1P28289 359 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 MARCKSP29966 332 aaPredicted RBP17.63■□□□□ 0.41
CHD3-215ENST00000572750 RARRES1P49788 294 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 ZRSR1Q15695 479 aaKnown RBP17.63■□□□□ 0.41
CHD3-215ENST00000572750 PLEKHG4Q58EX7 1191 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 FBXO47Q5MNV8 452 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 RASIP1Q5U651 963 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 KRT79Q5XKE5 535 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 NME8Q8N427 588 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 TMEM40Q8WWA1 233 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 OSMRQ99650 979 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 MMTAG2Q9BU76 263 aaKnown RBP17.63■□□□□ 0.41
CHD3-215ENST00000572750 IFIH1Q9BYX4 1025 aaKnown RBP17.63■□□□□ 0.41
CHD3-215ENST00000572750 CELF4Q9BZC1 486 aaKnown RBP17.63■□□□□ 0.41
CHD3-215ENST00000572750 DHX33Q9H6R0 707 aaKnown RBP17.63■□□□□ 0.41
CHD3-215ENST00000572750 CDHR5Q9HBB8 845 aa17.63■□□□□ 0.41
CHD3-215ENST00000572750 ANKEF1Q9NU02 776 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms