RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ZKSCAN3Q9BRR0 538 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 LRFN3Q9BTN0 628 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ATP6V0A4Q9HBG4 840 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ITM2CQ9NQX7 267 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 PLSCR4Q9NRQ2 329 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 MTMR10Q9NXD2 777 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ABI2Q9NYB9 513 aaPredicted RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 FAM13BQ9NYF5 915 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 RCAN3Q9UKA8 241 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ZNF214Q9UL59 606 aaPredicted RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 APOBEC2Q9Y235 224 aaKnown RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 LY75O60449 1722 aa3.53□□□□□ -1.85
VPS35-209ENST00000568642 KIF7Q2M1P5 1343 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 USP9XQ93008 2570 aaPredicted RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 A0A0A0MRY4 1105 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 TRAV20A0A0B4J274 112 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 KIAA1324LA8MWY0 1029 aaPredicted RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 CBX4O00257 560 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 TRAF5O00463 557 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 DLX3O60479 287 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 H2AFYO75367 372 aaKnown RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 TUSC2O75896 110 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 NAT2P11245 290 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 HNRNPLP14866 589 aaKnown RBP eCLIP3.52□□□□□ -1.85
VPS35-209ENST00000568642 NME1P15531 152 aaKnown RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 ATP4AP20648 1035 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 ALAS2P22557 587 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 PIK3CBP42338 1070 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 MAPK9P45984 424 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 ARSDP51689 593 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 COPAP53621 1224 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 GALNT1Q10472 559 aaPredicted RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 PPFIA1Q13136 1202 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 AP3B2Q13367 1082 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 LRRC32Q14392 662 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 TERF2Q15554 542 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 DDB1Q16531 1140 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 DTHD1Q6ZMT9 781 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 NEK10Q6ZWH5 1172 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 FASTKD5Q7L8L6 764 aaKnown RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 BTLAQ7Z6A9 289 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 TTC30AQ86WT1 665 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 LDHDQ86WU2 507 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 KIF18BQ86Y91 864 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 CMTR1Q8N1G2 835 aaKnown RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 KRT78Q8N1N4 520 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 OR2C3Q8N628 320 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 MYCT1Q8N699 235 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 ZBTB34Q8NCN2 500 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 SLC30A5Q8TAD4 765 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 IPCEF1Q8WWN9 437 aaPredicted RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 STON2Q8WXE9 905 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 CENPIQ92674 756 aaPredicted RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 HPS3Q969F9 1004 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 KIAA1191Q96A73 305 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 CDK5RAP3Q96JB5 506 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 CCDC138Q96M89 665 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 ZMAT2Q96NC0 199 aaKnown RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 ASB2Q96Q27 587 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 BARD1Q99728 777 aaKnown RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 CHCHD6Q9BRQ6 235 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 AARSD1Q9BTE6 412 aaKnown RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 C1QTNF1Q9BXJ1 281 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 XPO4Q9C0E2 1151 aaKnown RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 CEP44Q9C0F1 390 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 CXorf56Q9H5V9 222 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 ZNF576Q9H609 170 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 ELAC1Q9H777 363 aaKnown RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 LIN7BQ9HAP6 207 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 EMC7Q9NPA0 242 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 NKIRAS2Q9NYR9 191 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 GPRC5BQ9NZH0 403 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 ARHGAP28Q9P2N2 729 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 KANSL3Q9P2N6 904 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 APEX2Q9UBZ4 518 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 CFDP1Q9UEE9 299 aaPredicted RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 FEZ2Q9UHY8 353 aaPredicted RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 ZNF232Q9UNY5 417 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 CORINQ9Y5Q5 1042 aa3.52□□□□□ -1.85
VPS35-209ENST00000568642 MAGED1Q9Y5V3 778 aaPredicted RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 TRPM3Q9HCF6 1732 aaPredicted RBP3.52□□□□□ -1.85
VPS35-209ENST00000568642 SBNO1A3KN83 1393 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 METP08581 1390 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 KIAA0232Q92628 1395 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 RPTORQ8N122 1335 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 SYNRGQ9UMZ2 1314 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 A0A087WV62 115 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 A0A1W2PPC1 479 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 GTPBP10A4D1E9 387 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 BLACEA4D250 179 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 IQCA1LA6NCM1 817 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 SLC22A31A6NKX4 558 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 KHNYNO15037 678 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 TGM5O43548 720 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 NCK2O43639 380 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 AP1G1O43747 822 aa3.51□□□□□ -1.85
VPS35-209ENST00000568642 CTNND1O60716 968 aaKnown RBP3.51□□□□□ -1.85
VPS35-209ENST00000568642 SLITRK5O94991 958 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms