RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 CSPP1Q1MSJ5 1256 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 KIZQ2M2Z5 673 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 TRIM22Q8IYM9 498 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 LENG9Q96B70 501 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 CCDC136Q96JN2 1154 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 UIMC1Q96RL1 719 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 RIT2Q99578 217 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 C22orf23Q9BZE7 217 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 IGFLR1Q9H665 355 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 ELAC1Q9H777 363 aaKnown RBP19.06■□□□□ 0.64
CLN3-231ENST00000568422 NRBP2Q9NSY0 501 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 C5orf42Q9H799 3197 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 FSD2A1L4K1 749 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 PRR33A8MZF0 331 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 DNAJB1P25685 340 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 FAM189BP81408 668 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 SMAD4Q13485 552 aaKnown RBP19.05■□□□□ 0.64
CLN3-231ENST00000568422 RUFY3Q7L099 469 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 FAM177A1Q8N128 213 aaPredicted RBP19.05■□□□□ 0.64
CLN3-231ENST00000568422 EFHBQ8N7U6 833 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 POF1BQ8WVV4 589 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 MAP7D2Q96T17 732 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 OSMRQ99650 979 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 TMEM161AQ9NX61 479 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 CD207Q9UJ71 328 aa19.05■□□□□ 0.64
CLN3-231ENST00000568422 MBTPS2O43462 519 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 DCXO43602 365 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 VTNP04004 478 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 GTF2F1P35269 517 aaKnown RBP eCLIP19.04■□□□□ 0.64
CLN3-231ENST00000568422 JAK3P52333 1124 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 NLRP5P59047 1200 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 DLX2Q07687 328 aaPredicted RBP19.04■□□□□ 0.64
CLN3-231ENST00000568422 SPOUT1Q5T280 376 aaKnown RBP19.04■□□□□ 0.64
CLN3-231ENST00000568422 EFCAB12Q6NXP0 572 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 FAM228AQ86W67 206 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 RASGRP4Q8TDF6 673 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 ATP6V0A4Q9HBG4 840 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 DISC1Q9NRI5 854 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 VPS54Q9P1Q0 977 aa19.04■□□□□ 0.64
CLN3-231ENST00000568422 FAM86C2PA6NEL3 165 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 TBKBP1A7MCY6 615 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 MSH4O15457 936 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 HOXA2O43364 376 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 GAS7O60861 476 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 TBX10O75333 385 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 OATP04181 439 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 NDUFV1P49821 464 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 GATMP50440 423 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 CCT2P78371 535 aaKnown RBP19.03■□□□□ 0.64
CLN3-231ENST00000568422 PDE12Q6L8Q7 609 aaKnown RBP19.03■□□□□ 0.64
CLN3-231ENST00000568422 TRMT1LQ7Z2T5 733 aaKnown RBP19.03■□□□□ 0.64
CLN3-231ENST00000568422 RDM1Q8NG50 284 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 SLC5A5Q92911 643 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 TEKT3Q9BXF9 490 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 NCOA5Q9HCD5 579 aaKnown RBP19.03■□□□□ 0.64
CLN3-231ENST00000568422 ZSWIM6Q9HCJ5 1215 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 AKT3Q9Y243 479 aa19.03■□□□□ 0.64
CLN3-231ENST00000568422 LINC01565O15544 149 aa19.02■□□□□ 0.64
CLN3-231ENST00000568422 EYA4O95677 639 aa19.02■□□□□ 0.64
CLN3-231ENST00000568422 IBSPP21815 317 aaPredicted RBP19.02■□□□□ 0.64
CLN3-231ENST00000568422 EIF4BP23588 611 aaKnown RBP19.02■□□□□ 0.64
CLN3-231ENST00000568422 NLRP11P59045 1033 aaKnown RBP19.02■□□□□ 0.64
CLN3-231ENST00000568422 SSRP1Q08945 709 aaKnown RBP19.02■□□□□ 0.64
CLN3-231ENST00000568422 DSC3Q14574 896 aa19.02■□□□□ 0.64
CLN3-231ENST00000568422 CLUL1Q15846 466 aa19.02■□□□□ 0.64
CLN3-231ENST00000568422 FAM102BQ5T8I3 360 aa19.02■□□□□ 0.64
CLN3-231ENST00000568422 LINC01465Q8N7H1 131 aa19.02■□□□□ 0.64
CLN3-231ENST00000568422 ZNF274Q96GC6 653 aaPredicted RBP19.02■□□□□ 0.64
CLN3-231ENST00000568422 MSLNLQ96KJ4 702 aa19.02■□□□□ 0.64
CLN3-231ENST00000568422 PPP1R16BQ96T49 567 aa19.02■□□□□ 0.64
CLN3-231ENST00000568422 PCDHA4Q9UN74 947 aa19.02■□□□□ 0.64
CLN3-231ENST00000568422 CYP46A1Q9Y6A2 500 aa19.02■□□□□ 0.64
CLN3-231ENST00000568422 EDIL3O43854 480 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 ZNF862O60290 1169 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 CSPG5O95196 566 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 DEXIO95424 95 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 ZSCAN20P17040 1043 aaPredicted RBP19.01■□□□□ 0.63
CLN3-231ENST00000568422 LAG3P18627 525 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 IRS1P35568 1242 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 CLCN3P51790 818 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 CDC42EP1Q00587 391 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 PRKCEQ02156 737 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 COASYQ13057 564 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 Q4G0T1 1027 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 LRCH2Q5VUJ6 765 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 GALNT17Q6IS24 598 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 ADGRD2Q7Z7M1 963 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 MICAL1Q8TDZ2 1067 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 TBCKQ8TEA7 893 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 TM6SF1Q9BZW5 370 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 ADAMTS10Q9H324 1103 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 TLR9Q9NR96 1032 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 TYW1Q9NV66 732 aaKnown RBP19.01■□□□□ 0.63
CLN3-231ENST00000568422 LZTS1Q9Y250 596 aa19.01■□□□□ 0.63
CLN3-231ENST00000568422 CYP3A7-CYP3A51PA0A087WV96 503 aa19■□□□□ 0.63
CLN3-231ENST00000568422 CPLX1O14810 134 aa19■□□□□ 0.63
CLN3-231ENST00000568422 PPFIA3O75145 1194 aa19■□□□□ 0.63
CLN3-231ENST00000568422 FGF18O76093 207 aa19■□□□□ 0.63
CLN3-231ENST00000568422 CYP3A7P24462 503 aa19■□□□□ 0.63
CLN3-231ENST00000568422 NRIP1P48552 1158 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms