RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 AJAP1Q9UKB5 411 aaPredicted RBP22.22■■□□□ 1.15
CLN3-230ENST00000568076 SAMM50Q9Y512 469 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 CTDP1Q9Y5B0 961 aaPredicted RBP22.22■■□□□ 1.15
CLN3-230ENST00000568076 CD2APQ9Y5K6 639 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 A0A087X0T9 212 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 PDE2AO00408 941 aaPredicted RBP22.21■■□□□ 1.15
CLN3-230ENST00000568076 FAM228BP0C875 321 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 MYCLP12524 364 aaPredicted RBP22.21■■□□□ 1.15
CLN3-230ENST00000568076 RARRES1P49788 294 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 NSMFQ6X4W1 530 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 MAEAQ7L5Y9 396 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 SMAP1Q8IYB5 467 aaPredicted RBP22.21■■□□□ 1.15
CLN3-230ENST00000568076 ZNF280CQ8ND82 737 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 REPS2Q8NFH8 660 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 RBM46Q8TBY0 533 aaKnown RBP22.21■■□□□ 1.15
CLN3-230ENST00000568076 SNX12Q9UMY4 172 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 LOXHD1Q8IVV2 1947 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 ATP8B1O43520 1251 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 ENOX2Q16206 610 aaKnown RBP22.21■■□□□ 1.15
CLN3-230ENST00000568076 UGCGQ16739 394 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 GBP6Q6ZN66 633 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 DRC1Q96MC2 740 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 MKNK1Q9BUB5 465 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 GBP3Q9H0R5 595 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 TBC1D22BQ9NU19 505 aa22.21■■□□□ 1.15
CLN3-230ENST00000568076 DBR1Q9UK59 544 aaKnown RBP22.21■■□□□ 1.15
CLN3-230ENST00000568076 LYPLA2O95372 231 aa22.2■■□□□ 1.14
CLN3-230ENST00000568076 QARSP47897 775 aaKnown RBP22.2■■□□□ 1.14
CLN3-230ENST00000568076 VSNL1P62760 191 aa22.2■■□□□ 1.14
CLN3-230ENST00000568076 STXBP4Q6ZWJ1 553 aa22.2■■□□□ 1.14
CLN3-230ENST00000568076 TRPM4Q8TD43 1214 aa22.2■■□□□ 1.14
CLN3-230ENST00000568076 SH2D3AQ9BRG2 576 aa22.2■■□□□ 1.14
CLN3-230ENST00000568076 ST7Q9NRC1 585 aa22.2■■□□□ 1.14
CLN3-230ENST00000568076 GCNT4Q9P109 453 aa22.2■■□□□ 1.14
CLN3-230ENST00000568076 ADAMTS1Q9UHI8 967 aa22.2■■□□□ 1.14
CLN3-230ENST00000568076 RLFQ13129 1914 aa22.2■■□□□ 1.14
CLN3-230ENST00000568076 GTPBP10A4D1E9 387 aaKnown RBP22.19■■□□□ 1.14
CLN3-230ENST00000568076 TMEM150BA6NC51 233 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 BAATQ14032 418 aaPredicted RBP22.19■■□□□ 1.14
CLN3-230ENST00000568076 LONRF2Q1L5Z9 754 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 HS2ST1Q7LGA3 356 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 HNRNPLLQ8WVV9 542 aaKnown RBP22.19■■□□□ 1.14
CLN3-230ENST00000568076 SPAG5Q96R06 1193 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 FUT8Q9BYC5 575 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 RNF146Q9NTX7 359 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 FBXL5Q9UKA1 691 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 MYH11P35749 1972 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 BUB1O43683 1085 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 CCNE2O96020 404 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 FDX1P10109 184 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 CYP2J2P51589 502 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 HMGCS2P54868 508 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 PTK2Q05397 1052 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 PLS1Q14651 629 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 R3HDM1Q15032 1099 aaKnown RBP22.19■■□□□ 1.14
CLN3-230ENST00000568076 ARHGEF16Q5VV41 709 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 GJB7Q6PEY0 223 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 ZNF571Q7Z3V5 609 aaPredicted RBP22.19■■□□□ 1.14
CLN3-230ENST00000568076 CREG2Q8IUH2 290 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 ALS2CR12Q96Q35 445 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.19■■□□□ 1.14
CLN3-230ENST00000568076 AS3MTQ9HBK9 375 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 PNMA2Q9UL42 364 aa22.19■■□□□ 1.14
CLN3-230ENST00000568076 K7ENM7 598 aa22.18■■□□□ 1.14
CLN3-230ENST00000568076 JAM2P57087 298 aa22.18■■□□□ 1.14
CLN3-230ENST00000568076 CKAP4Q07065 602 aaKnown RBP22.18■■□□□ 1.14
CLN3-230ENST00000568076 BEND6Q5SZJ8 279 aaPredicted RBP22.18■■□□□ 1.14
CLN3-230ENST00000568076 TXLNBQ8N3L3 684 aa22.18■■□□□ 1.14
CLN3-230ENST00000568076 RNF10Q8N5U6 811 aaKnown RBP22.18■■□□□ 1.14
CLN3-230ENST00000568076 COG1Q8WTW3 980 aa22.18■■□□□ 1.14
CLN3-230ENST00000568076 PACSIN1Q9BY11 444 aa22.18■■□□□ 1.14
CLN3-230ENST00000568076 PICK1Q9NRD5 415 aa22.18■■□□□ 1.14
CLN3-230ENST00000568076 YWHABP31946 246 aaKnown RBP22.18■■□□□ 1.14
CLN3-230ENST00000568076 C12orf42Q96LP6 360 aa22.18■■□□□ 1.14
CLN3-230ENST00000568076 NOX5Q96PH1 765 aa22.18■■□□□ 1.14
CLN3-230ENST00000568076 TESPA1A2RU30 521 aaPredicted RBP22.17■■□□□ 1.14
CLN3-230ENST00000568076 NCK2O43639 380 aa22.17■■□□□ 1.14
CLN3-230ENST00000568076 PRLRP16471 622 aa22.17■■□□□ 1.14
CLN3-230ENST00000568076 KLRC1P26715 233 aa22.17■■□□□ 1.14
CLN3-230ENST00000568076 FMO5P49326 533 aa22.17■■□□□ 1.14
CLN3-230ENST00000568076 IQCEQ6IPM2 695 aa22.17■■□□□ 1.14
CLN3-230ENST00000568076 SLC9A9Q8IVB4 645 aa22.17■■□□□ 1.14
CLN3-230ENST00000568076 ZNF214Q9UL59 606 aaPredicted RBP22.17■■□□□ 1.14
CLN3-230ENST00000568076 ADAMTS5Q9UNA0 930 aa22.17■■□□□ 1.14
CLN3-230ENST00000568076 COL11A1P12107 1806 aaPredicted RBP22.17■■□□□ 1.14
CLN3-230ENST00000568076 BACH1O14867 736 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 PPP1R12BO60237 982 aaPredicted RBP22.16■■□□□ 1.14
CLN3-230ENST00000568076 DSG3P32926 999 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 NAB2Q15742 525 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 CBWD6Q4V339 395 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 CBWD3Q5JTY5 395 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 CBWD5Q5RIA9 395 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 UTP14CQ5TAP6 766 aaKnown RBP22.16■■□□□ 1.14
CLN3-230ENST00000568076 SNRNP48Q6IEG0 339 aaKnown RBP22.16■■□□□ 1.14
CLN3-230ENST00000568076 NFRKBQ6P4R8 1299 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 APOBEC3FQ8IUX4 373 aaKnown RBP22.16■■□□□ 1.14
CLN3-230ENST00000568076 C4orf19Q8IY42 314 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 NLGN2Q8NFZ4 835 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 RPGRIP1Q96KN7 1286 aa22.16■■□□□ 1.14
CLN3-230ENST00000568076 ABCB6Q9NP58 842 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms