RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	VTN	P04004	478 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	STAG3L1	P0CL83	205 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	KRT2	P35908	639 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	CLCN3	P51790	818 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	PSMC5	P62195	406 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	PRKCE	Q02156	737 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	TBC1D8B	Q0IIM8	1120 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	NFX1	Q12986	1120 aa	Known RBP	7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	PPP2R5C	Q13362	524 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	TRIM29	Q14134	588 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	SKIV2L	Q15477	1246 aa	Known RBP	7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	TARBP2	Q15633	366 aa	Known RBP	7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	UGCG	Q16739	394 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	AAK1	Q2M2I8	961 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	KIZ	Q2M2Z5	673 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	TMEM266	Q2M3C6	531 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	EPC2	Q52LR7	807 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	TJAP1	Q5JTD0	557 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	B3GNT9	Q6UX72	402 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	NPAS4	Q8IUM7	802 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	CRIPAK	Q8N1N5	446 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	PIP4P2	Q8N4L2	257 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	ZNF689	Q96CS4	500 aa	Predicted RBP	7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	ZSCAN31	Q96LW9	406 aa	Predicted RBP	7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	ASB2	Q96Q27	587 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	MAP7D2	Q96T17	732 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	TMX1	Q9H3N1	280 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	ERVK-5	Q9HDB9	667 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	THEG	Q9P2T0	379 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	ST3GAL5	Q9UNP4	418 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	AKT3	Q9Y243	479 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	NOC2L	Q9Y3T9	749 aa	Known RBP	7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	CDH23	Q9H251	3354 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	ATG2A	Q2TAZ0	1938 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	KIAA1671	Q9BY89	1806 aa		7.78	□□□□□ -1.16
SF3B3-209	ENST00000567635	DENND3	A2RUS2	1198 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	BTBD18	B2RXH4	712 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635		H3BNC9	293 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	EML1	O00423	815 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	JAK2	O60674	1132 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	DKC1	O60832	514 aa	Known RBP eCLIP	7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	MMP1	P03956	469 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	RB1	P06400	928 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	BMPR1A	P36894	532 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	QARS	P47897	775 aa	Known RBP	7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	DNM2	P50570	870 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	NLRP11	P59045	1033 aa	Known RBP	7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	CDC42EP1	Q00587	391 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	NR5A1	Q13285	461 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	GPM6B	Q13491	265 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	BTG3	Q14201	252 aa	Predicted RBP	7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	PTPRO	Q16827	1216 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	C8orf34	Q49A92	452 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	EARS2	Q5JPH6	523 aa	Known RBP	7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	POTEH	Q6S545	545 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	SLC24A5	Q71RS6	500 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	SLFN12	Q8IYM2	578 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	LRRC71	Q8N4P6	559 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	LINC01465	Q8N7H1	131 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	TMEM40	Q8WWA1	233 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	LINC01599	Q8WXQ3	324 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	HAS1	Q92839	578 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	TNFRSF25	Q93038	417 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	HLA-C	Q95604	372 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	MRPL38	Q96DV4	380 aa	Known RBP	7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	PPP1R16B	Q96T49	567 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	ADAM2	Q99965	735 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	LLPH	Q9BRT6	129 aa	Known RBP	7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	ADAMTS10	Q9H324	1103 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	KCNMB3	Q9NPA1	279 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	RGS18	Q9NS28	235 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	C1orf112	Q9NSG2	853 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	LRFN2	Q9ULH4	789 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	COG5	Q9UP83	839 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	RWDD3	Q9Y3V2	267 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	PCDHB7	Q9Y5E2	793 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	ADGRA3	Q8IWK6	1321 aa		7.77	□□□□□ -1.17
SF3B3-209	ENST00000567635	UNC80	Q8N2C7	3258 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	REV3L	O60673	3130 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	FAM205C	A6NFA0	338 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635		C9IYK1	514 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	C5orf67	F2Z3F1	127 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	MGEA5	O60502	916 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	P4HB	P07237	508 aa	Known RBP	7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	EIF4B	P23588	611 aa	Known RBP	7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	CTNNB1	P35222	781 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	SARS	P49591	514 aa	Known RBP	7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	FOSB	P53539	338 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	FAM189B	P81408	668 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	DSC3	Q14574	896 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	EPHA7	Q15375	998 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	SAFB	Q15424	915 aa	Known RBP eCLIP	7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	MTERF2	Q49AM1	385 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	FAM228A	Q86W67	206 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	CCDC83	Q8IWF9	413 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	DIS3L2	Q8IYB7	885 aa	Known RBP	7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	EXOC8	Q8IYI6	725 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	CMTR2	Q8IYT2	770 aa	Known RBP	7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	BANK1	Q8NDB2	785 aa		7.76	□□□□□ -1.17
SF3B3-209	ENST00000567635	IL27	Q8NEV9	243 aa		7.76	□□□□□ -1.17

Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms