RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 VTNP04004 478 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 OATP04181 439 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 ITGB1P05556 798 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 LTBRP36941 435 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 JAK3P52333 1124 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 CAMK1Q14012 370 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 CPLX2Q6PUV4 134 aaKnown RBP21.15■□□□□ 0.98
CLN3-218ENST00000565688 KLHL23Q8NBE8 558 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 SPPL3Q8TCT6 385 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 SLC5A5Q92911 643 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 LRFN3Q9BTN0 628 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 AAASQ9NRG9 546 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 PCDHA4Q9UN74 947 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 PCDHB12Q9Y5F1 795 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 EVPLQ92817 2033 aa21.14■□□□□ 0.98
CLN3-218ENST00000565688 DEXIO95424 95 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 IBSPP21815 317 aaPredicted RBP21.14■□□□□ 0.97
CLN3-218ENST00000565688 GATMP50440 423 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 LRCH2Q5VUJ6 765 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 GALNT17Q6IS24 598 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 EFCAB12Q6NXP0 572 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 FAM228AQ86W67 206 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 RDM1Q8NG50 284 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 TBCKQ8TEA7 893 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 PPP1R16BQ96T49 567 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 TEKT3Q9BXF9 490 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 ELAC1Q9H777 363 aaKnown RBP21.14■□□□□ 0.97
CLN3-218ENST00000565688 RAPGEFL1Q9UHV5 662 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 AKT3Q9Y243 479 aa21.14■□□□□ 0.97
CLN3-218ENST00000565688 EDIL3O43854 480 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 ALADP13716 330 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 CLCN3P51790 818 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 FAM189BP81408 668 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 PRKCEQ02156 737 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 CSPP1Q1MSJ5 1256 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 Q4G0T1 1027 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 IGFLR1Q9H665 355 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 ATP6V0A4Q9HBG4 840 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 TMEM161AQ9NX61 479 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 ATG2AQ2TAZ0 1938 aa21.13■□□□□ 0.97
CLN3-218ENST00000565688 CYP3A7-CYP3A51PA0A087WV96 503 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 TBKBP1A7MCY6 615 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 CHMP2AO43633 222 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 ZNF862O60290 1169 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 CSPG5O95196 566 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 CYP3A7P24462 503 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 DNAJB1P25685 340 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 NLRP11P59045 1033 aaKnown RBP21.12■□□□□ 0.97
CLN3-218ENST00000565688 UBE3AQ05086 875 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 ZP2Q05996 745 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 ADAM15Q13444 863 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 SPOUT1Q5T280 376 aaKnown RBP21.12■□□□□ 0.97
CLN3-218ENST00000565688 ADHFE1Q8IWW8 467 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 BLIDQ8IZY5 108 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 LINC01465Q8N7H1 131 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 DAGLBQ8NCG7 672 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 POF1BQ8WVV4 589 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 ADAMTS10Q9H324 1103 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 UNC45AQ9H3U1 944 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 KIAA1671Q9BY89 1806 aa21.12■□□□□ 0.97
CLN3-218ENST00000565688 HOXA2O43364 376 aa21.11■□□□□ 0.97
CLN3-218ENST00000565688 PSMD10O75832 226 aa21.11■□□□□ 0.97
CLN3-218ENST00000565688 EIF4BP23588 611 aaKnown RBP21.11■□□□□ 0.97
CLN3-218ENST00000565688 TBC1D8BQ0IIM8 1120 aa21.11■□□□□ 0.97
CLN3-218ENST00000565688 DSC3Q14574 896 aa21.11■□□□□ 0.97
CLN3-218ENST00000565688 SMAD2Q15796 467 aaKnown RBP21.11■□□□□ 0.97
CLN3-218ENST00000565688 FAM102BQ5T8I3 360 aa21.11■□□□□ 0.97
CLN3-218ENST00000565688 MOXD1Q6UVY6 613 aa21.11■□□□□ 0.97
CLN3-218ENST00000565688 POP1Q99575 1024 aaKnown RBP21.11■□□□□ 0.97
CLN3-218ENST00000565688 HCN4Q9Y3Q4 1203 aa21.11■□□□□ 0.97
CLN3-218ENST00000565688 ARIH1Q9Y4X5 557 aaPredicted RBP21.11■□□□□ 0.97
CLN3-218ENST00000565688 M0R2N6 131 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 TBX10O75333 385 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 ZSCAN20P17040 1043 aaPredicted RBP21.1■□□□□ 0.97
CLN3-218ENST00000565688 GTF2F1P35269 517 aaKnown RBP eCLIP21.1■□□□□ 0.97
CLN3-218ENST00000565688 NDUFV1P49821 464 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 CDC42EP1Q00587 391 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 DLX2Q07687 328 aaPredicted RBP21.1■□□□□ 0.97
CLN3-218ENST00000565688 SMAD4Q13485 552 aaKnown RBP21.1■□□□□ 0.97
CLN3-218ENST00000565688 UGCGQ16739 394 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 MIER3Q7Z3K6 550 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 LRRC71Q8N4P6 559 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 EFHBQ8N7U6 833 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 UPF3BQ9BZI7 483 aaKnown RBP21.1■□□□□ 0.97
CLN3-218ENST00000565688 C11orf16Q9NQ32 467 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 PDRG1Q9NUG6 133 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 CD207Q9UJ71 328 aa21.1■□□□□ 0.97
CLN3-218ENST00000565688 FSD2A1L4K1 749 aa21.09■□□□□ 0.97
CLN3-218ENST00000565688 C19orf67A6NJJ6 358 aa21.09■□□□□ 0.97
CLN3-218ENST00000565688 MBTPS2O43462 519 aa21.09■□□□□ 0.97
CLN3-218ENST00000565688 CDKL5O76039 1030 aa21.09■□□□□ 0.97
CLN3-218ENST00000565688 IRS1P35568 1242 aa21.09■□□□□ 0.97
CLN3-218ENST00000565688 NONOQ15233 471 aaKnown RBP eCLIP21.09■□□□□ 0.97
CLN3-218ENST00000565688 CLUL1Q15846 466 aa21.09■□□□□ 0.97
CLN3-218ENST00000565688 SCLT1Q96NL6 688 aa21.09■□□□□ 0.97
CLN3-218ENST00000565688 NIFKQ9BYG3 293 aaKnown RBP21.09■□□□□ 0.97
CLN3-218ENST00000565688 TMEM117Q9H0C3 514 aa21.09■□□□□ 0.97
CLN3-218ENST00000565688 TYW1Q9NV66 732 aaKnown RBP21.09■□□□□ 0.97
CLN3-218ENST00000565688 FNDC1Q4ZHG4 1894 aaPredicted RBP21.09■□□□□ 0.97
CLN3-218ENST00000565688 WDR81Q562E7 1941 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms