RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PSAPP07602 524 aa19.11■□□□□ 0.65
CLN3-211ENST00000564091 CLCN3P51790 818 aa19.11■□□□□ 0.65
CLN3-211ENST00000564091 FAM189BP81408 668 aa19.11■□□□□ 0.65
CLN3-211ENST00000564091 RBM10P98175 930 aaKnown RBP19.11■□□□□ 0.65
CLN3-211ENST00000564091 SETQ01105 290 aaPredicted RBP19.11■□□□□ 0.65
CLN3-211ENST00000564091 ODR4Q5SWX8 454 aa19.11■□□□□ 0.65
CLN3-211ENST00000564091 SMAP1Q8IYB5 467 aaPredicted RBP19.11■□□□□ 0.65
CLN3-211ENST00000564091 CCDC12Q8WUD4 166 aaPredicted RBP19.11■□□□□ 0.65
CLN3-211ENST00000564091 ATP6V0A4Q9HBG4 840 aa19.11■□□□□ 0.65
CLN3-211ENST00000564091 TCEAL9Q9UHQ7 104 aa19.11■□□□□ 0.65
CLN3-211ENST00000564091 SAMM50Q9Y512 469 aa19.11■□□□□ 0.65
CLN3-211ENST00000564091 KAT6AQ92794 2004 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 FGF18O76093 207 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 GNA11P29992 359 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 ERVFC1P60507 584 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 COASYQ13057 564 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 HFE2Q6ZVN8 426 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 THNSL1Q8IYQ7 743 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 SMRP1Q8NCR6 262 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 KCNB2Q92953 911 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 LENG9Q96B70 501 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 ZNF668Q96K58 619 aaPredicted RBP19.1■□□□□ 0.65
CLN3-211ENST00000564091 AAASQ9NRG9 546 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 SNX14Q9Y5W7 946 aa19.1■□□□□ 0.65
CLN3-211ENST00000564091 EDIL3O43854 480 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 CIITAP33076 1130 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 NLRP11P59045 1033 aaKnown RBP19.09■□□□□ 0.65
CLN3-211ENST00000564091 AKAP17AQ02040 695 aaKnown RBP19.09■□□□□ 0.65
CLN3-211ENST00000564091 UBE3AQ05086 875 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 DSC3Q14574 896 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 HERC4Q5GLZ8 1057 aaPredicted RBP19.09■□□□□ 0.65
CLN3-211ENST00000564091 MCTP2Q6DN12 878 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 EFCAB12Q6NXP0 572 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 BLOC1S2Q6QNY1 142 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 LRRC71Q8N4P6 559 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 COLGALT1Q8NBJ5 622 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 CWH43Q9H720 699 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 TLR9Q9NR96 1032 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 RNF216Q9NWF9 866 aaPredicted RBP19.09■□□□□ 0.65
CLN3-211ENST00000564091 TMEM161AQ9NX61 479 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 CEP131Q9UPN4 1083 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 AKT3Q9Y243 479 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 USP15Q9Y4E8 981 aaPredicted RBP19.09■□□□□ 0.65
CLN3-211ENST00000564091 TRIOO75962 3097 aa19.09■□□□□ 0.65
CLN3-211ENST00000564091 WDFY4Q6ZS81 3184 aa19.08■□□□□ 0.65
CLN3-211ENST00000564091 ZNF862O60290 1169 aa19.08■□□□□ 0.64
CLN3-211ENST00000564091 HSPA4P34932 840 aa19.08■□□□□ 0.64
CLN3-211ENST00000564091 NTRK3Q16288 839 aa19.08■□□□□ 0.64
CLN3-211ENST00000564091 FAM43BQ6ZT52 329 aaPredicted RBP19.08■□□□□ 0.64
CLN3-211ENST00000564091 ALYREFQ86V81 257 aaKnown RBP19.08■□□□□ 0.64
CLN3-211ENST00000564091 VN1R2Q8NFZ6 395 aa19.08■□□□□ 0.64
CLN3-211ENST00000564091 SLC26A6Q9BXS9 759 aa19.08■□□□□ 0.64
CLN3-211ENST00000564091 ADAMTS10Q9H324 1103 aa19.08■□□□□ 0.64
CLN3-211ENST00000564091 VPS54Q9P1Q0 977 aa19.08■□□□□ 0.64
CLN3-211ENST00000564091 WDR64B1ANS9 1081 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 MSH4O15457 936 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 MAGEB2O15479 319 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 LRRC55Q6ZSA7 311 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 LINC01465Q8N7H1 131 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 GJA10Q969M2 543 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 FAM167AQ96KS9 214 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 FBXL18Q96ME1 805 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 MAP7D2Q96T17 732 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 ELAC1Q9H777 363 aaKnown RBP19.07■□□□□ 0.64
CLN3-211ENST00000564091 DISC1Q9NRI5 854 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 RNF19AQ9NV58 838 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 RALGAPA2Q2PPJ7 1873 aa19.07■□□□□ 0.64
CLN3-211ENST00000564091 LOC730098B7Z3J9 87 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 CHMP2AO43633 222 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 OATP04181 439 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 RPS6KB1P23443 525 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 TMOD1P28289 359 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 PBX3P40426 434 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 CCT2P78371 535 aaKnown RBP19.06■□□□□ 0.64
CLN3-211ENST00000564091 UGCGQ16739 394 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 DUSP6Q16828 381 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 PLPP4Q5VZY2 271 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 BICD2Q8TD16 824 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 EDAQ92838 391 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 CCDC136Q96JN2 1154 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 CASD1Q96PB1 797 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 TMEM117Q9H0C3 514 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 NCOA5Q9HCD5 579 aaKnown RBP19.06■□□□□ 0.64
CLN3-211ENST00000564091 NRBP2Q9NSY0 501 aa19.06■□□□□ 0.64
CLN3-211ENST00000564091 NLRC5Q86WI3 1866 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 FSCN2O14926 492 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 ZSCAN20P17040 1043 aaPredicted RBP19.05■□□□□ 0.64
CLN3-211ENST00000564091 LAG3P18627 525 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 FGFR4P22455 802 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 EIF4BP23588 611 aaKnown RBP19.05■□□□□ 0.64
CLN3-211ENST00000564091 PRKCEQ02156 737 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 FBXL16Q8N461 479 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 RNF169Q8NCN4 708 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 CCDC148Q8NFR7 591 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 RPGRIP1Q96KN7 1286 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 RNF26Q9BY78 433 aaPredicted RBP19.05■□□□□ 0.64
CLN3-211ENST00000564091 UNC45AQ9H3U1 944 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 NID2Q14112 1375 aa19.05■□□□□ 0.64
CLN3-211ENST00000564091 GAS7O60861 476 aa19.04■□□□□ 0.64
CLN3-211ENST00000564091 IFNAR1P17181 557 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms