RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 WASHC2AQ641Q2 1341 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 ZNF839A8K0R7 811 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 ZNF561-AS1K7EIQ3 104 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 MPHOSPH10O00566 681 aaKnown RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 MAN2B1O00754 1011 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 COQ9O75208 318 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 FBXO21O94952 628 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 NPTXRO95502 500 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 SLPIP03973 132 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 PTPN1P18031 435 aaKnown RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 CASQ1P31415 396 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 FLT3P36888 993 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 HMGN5P82970 282 aaKnown RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 PFKPQ01813 784 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 DMTNQ08495 405 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 BIRC2Q13490 618 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 BMS1Q14692 1282 aaKnown RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 SMAD2Q15796 467 aaKnown RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 SKIDA1Q1XH10 827 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 TRMT10BQ6PF06 316 aaKnown RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 IGDCC4Q8TDY8 1250 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 ZCCHC14Q8WYQ9 949 aaKnown RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 CCDC94Q9BW85 323 aaPredicted RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 MRIQ9BWK5 157 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 INO80BQ9C086 356 aaPredicted RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 TSPYL1Q9H0U9 437 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 RANBP17Q9H2T7 1088 aaKnown RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 RIC8BQ9NVN3 520 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 CWC25Q9NXE8 425 aaPredicted RBP6.08□□□□□ -1.44
VPS35-205ENST00000563984 ARHGAP20Q9P2F6 1191 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 CEP83Q9Y592 693 aa6.08□□□□□ -1.44
VPS35-205ENST00000563984 CCDC189A1A4V9 331 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 C1QTNF3-AMACRE9PGA6 284 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 PES1O00541 588 aaKnown RBP6.07□□□□□ -1.44
VPS35-205ENST00000563984 PLD2O14939 933 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 CLASP2O75122 1294 aaKnown RBP6.07□□□□□ -1.44
VPS35-205ENST00000563984 COL6A1P12109 1028 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 KRT15P19012 456 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 CD151P48509 253 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 DNM2P50570 870 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 JAM2P57087 298 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 DBPQ10586 325 aaPredicted RBP6.07□□□□□ -1.44
VPS35-205ENST00000563984 SURF1Q15526 300 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 KLHL10Q6JEL2 608 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 PTRH1Q86Y79 214 aaKnown RBP6.07□□□□□ -1.44
VPS35-205ENST00000563984 KLHL36Q8N4N3 616 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 NAP1L4Q99733 375 aaKnown RBP6.07□□□□□ -1.44
VPS35-205ENST00000563984 KRTAP3-1Q9BYR8 98 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 CELF4Q9BZC1 486 aaKnown RBP6.07□□□□□ -1.44
VPS35-205ENST00000563984 GTPBP4Q9BZE4 634 aaKnown RBP6.07□□□□□ -1.44
VPS35-205ENST00000563984 SLITRK6Q9H5Y7 841 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 ZSWIM4Q9H7M6 989 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 BARX1Q9HBU1 254 aaPredicted RBP6.07□□□□□ -1.44
VPS35-205ENST00000563984 NCOA5Q9HCD5 579 aaKnown RBP6.07□□□□□ -1.44
VPS35-205ENST00000563984 KCND1Q9NSA2 647 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 MAP3K20Q9NYL2 800 aaKnown RBP6.07□□□□□ -1.44
VPS35-205ENST00000563984 SCINQ9Y6U3 715 aa6.07□□□□□ -1.44
VPS35-205ENST00000563984 FAM90A27PA6NNH2 459 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 KIF1CO43896 1103 aaKnown RBP6.06□□□□□ -1.44
VPS35-205ENST00000563984 CT47B1P0C2W7 299 aaPredicted RBP6.06□□□□□ -1.44
VPS35-205ENST00000563984 MAN1A1P33908 653 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 CCDC174Q6PII3 467 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 BRAPQ7Z569 592 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 PLEKHH3Q7Z736 793 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 DRC7Q8IY82 874 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 RSPH1Q8WYR4 309 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 MBD6Q96DN6 1003 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 SCLYQ96I15 445 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 IFT122Q9HBG6 1241 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 SMURF1Q9HCE7 757 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 ZFP69BQ9UJL9 534 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 INVSQ9Y283 1065 aa6.06□□□□□ -1.44
VPS35-205ENST00000563984 RAD54L2Q9Y4B4 1467 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 TCRBV16S1A1N1A0A5B0 115 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 TLDC2A0PJX2 215 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 CTAGE5O15320 804 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 KLHL18O94889 574 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 RASGRP1O95267 797 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 PLATP00750 562 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 KNG1P01042 644 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 HERVK_113P62684 666 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 NFATC3Q12968 1075 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 CCDC144BQ3MJ40 725 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 FNDC3BQ53EP0 1204 aaKnown RBP6.05□□□□□ -1.44
VPS35-205ENST00000563984 PKN3Q6P5Z2 889 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 DPP8Q6V1X1 898 aaPredicted RBP6.05□□□□□ -1.44
VPS35-205ENST00000563984 ANKRD13BQ86YJ7 626 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 RPS6KC1Q96S38 1066 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 CDC5LQ99459 802 aaKnown RBP6.05□□□□□ -1.44
VPS35-205ENST00000563984 SMPD4Q9NXE4 827 aa6.05□□□□□ -1.44
VPS35-205ENST00000563984 ISY1Q9ULR0 285 aaKnown RBP6.05□□□□□ -1.44
VPS35-205ENST00000563984 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.04□□□□□ -1.44
VPS35-205ENST00000563984 B4GALT3O60512 393 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 ITGB3P05106 788 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 HSP90AB1P08238 724 aaKnown RBP6.04□□□□□ -1.44
VPS35-205ENST00000563984 ATICP31939 592 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 GLRBP48167 497 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 NAP1L1P55209 391 aaKnown RBP6.04□□□□□ -1.44
VPS35-205ENST00000563984 PHF19Q5T6S3 580 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 ZSCAN30Q86W11 494 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms