RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 HERVK_113P62684 666 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 MRPS9P82933 396 aaKnown RBP8.25□□□□□ -1.09
VPS39-204ENST00000561818 CTTNQ14247 550 aaKnown RBP8.25□□□□□ -1.09
VPS39-204ENST00000561818 ECM1Q16610 540 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 MUM1L1Q5H9M0 696 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 LDLRAD1Q5T700 205 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 PPP1R2P3Q6NXS1 205 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 GBP6Q6ZN66 633 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 GADL1Q6ZQY3 521 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 ZNF720Q7Z2F6 126 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 TMEM139Q8IV31 216 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 ZNF710Q8N1W2 664 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 PDCL2Q8N4E4 241 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 TCP11Q8WWU5 503 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 SLC7A3Q8WY07 619 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 ERO1AQ96HE7 468 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 ALS2CR12Q96Q35 445 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 TAAR1Q96RJ0 339 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 PARK7Q99497 189 aaKnown RBP8.25□□□□□ -1.09
VPS39-204ENST00000561818 P2RX7Q99572 595 aaKnown RBP8.25□□□□□ -1.09
VPS39-204ENST00000561818 EIF3CQ99613 913 aaKnown RBP8.25□□□□□ -1.09
VPS39-204ENST00000561818 NTPCRQ9BSD7 190 aaKnown RBP8.25□□□□□ -1.09
VPS39-204ENST00000561818 TAF1DQ9H5J8 278 aaPredicted RBP8.25□□□□□ -1.09
VPS39-204ENST00000561818 AZI2Q9H6S1 392 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 ATP6V0A4Q9HBG4 840 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 NRBP2Q9NSY0 501 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 DNAI1Q9UI46 699 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 TSKSQ9UJT2 592 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 IGSF9BQ9UPX0 1349 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 TTC26A0AVF1 554 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 ANO9A1A5B4 782 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 K7ENM7 598 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 TULP1O00294 542 aaPredicted RBP8.24□□□□□ -1.09
VPS39-204ENST00000561818 TEX33O43247 280 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 NDUFA10O95299 355 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 SERPING1P05155 500 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 SUPT20HL2P0C7V6 817 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 KCNA2P16389 499 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 CASQ1P31415 396 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 ALDH5A1P51649 535 aaPredicted RBP8.24□□□□□ -1.09
VPS39-204ENST00000561818 EFNA5P52803 228 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 PMS1P54277 932 aaKnown RBP8.24□□□□□ -1.09
VPS39-204ENST00000561818 KIF5AQ12840 1032 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 EXOC3L4Q17RC7 722 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 BRDTQ58F21 947 aaPredicted RBP8.24□□□□□ -1.09
VPS39-204ENST00000561818 MIIPQ5JXC2 388 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 SLFN12LQ6IEE8 588 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 METTL7BQ6UX53 244 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 ANKRD23Q86SG2 305 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 FAM186BQ8IYM0 893 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 C2orf69Q8N8R5 385 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 MNS1Q8NEH6 495 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 CYP2W1Q8TAV3 490 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 AFAP1L1Q8TED9 768 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 LRRC15Q8TF66 581 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 TBC1D5Q92609 795 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 SLC10A4Q96EP9 437 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 OTUD5Q96G74 571 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 TTYH3Q9C0H2 523 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 ASCC2Q9H1I8 757 aaPredicted RBP8.24□□□□□ -1.09
VPS39-204ENST00000561818 CREBZFQ9NS37 354 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 RGL1Q9NZL6 768 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 COL20A1Q9P218 1284 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 DIS3Q9Y2L1 958 aaKnown RBP8.24□□□□□ -1.09
VPS39-204ENST00000561818 FARP1Q9Y4F1 1045 aaPredicted RBP8.24□□□□□ -1.09
VPS39-204ENST00000561818 ADGRG1Q9Y653 693 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 IVNS1ABPQ9Y6Y0 642 aa8.24□□□□□ -1.09
VPS39-204ENST00000561818 ASTN2O75129 1339 aaPredicted RBP8.24□□□□□ -1.09
VPS39-204ENST00000561818 PTPRFP10586 1907 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 RLFQ13129 1914 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 UQCRHLA0A096LP55 91 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 CTAGE9A4FU28 777 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 BACH1O14867 736 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 NKRFO15226 690 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS39-204ENST00000561818 HIP1RO75146 1068 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 PPP1R37O75864 691 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 ATG7O95352 703 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 SLU7O95391 586 aaKnown RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 LDHAP00338 332 aaKnown RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 UQCRHP07919 91 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 GARTP22102 1010 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 MCM3P25205 808 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 NAMPTP43490 491 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 FXR1P51114 621 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS39-204ENST00000561818 AP3M2P53677 418 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 NCKAP1LP55160 1127 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 ADKP55263 362 aaKnown RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 GTF2BQ00403 316 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 CDC42EP1Q00587 391 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 POU5F1Q01860 360 aaKnown RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 STRN3Q13033 797 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 ITGB3BPQ13352 177 aaPredicted RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 MXD4Q14582 209 aaPredicted RBP8.23□□□□□ -1.09
VPS39-204ENST00000561818 CLUL1Q15846 466 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 KYAT1Q16773 422 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 HSP90AA4PQ58FG1 418 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 XKR9Q5GH70 373 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 SFMBT2Q5VUG0 894 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 ENOSF1Q7L5Y1 443 aa8.23□□□□□ -1.09
VPS39-204ENST00000561818 APBB1IPQ7Z5R6 666 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms