RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 FERMT2Q96AC1 680 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 COX4I2Q96KJ9 171 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 ZNF317Q96PQ6 595 aaPredicted RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 CCSER1Q9C0I3 900 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 VPS33BQ9H267 617 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 ALDH8A1Q9H2A2 487 aaPredicted RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 DCLRE1BQ9H816 532 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 CNNM2Q9H8M5 875 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 CDK12Q9NYV4 1490 aaPredicted RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 MYH7P12883 1935 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 ADGRB3O60242 1522 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 A0A1W2PQ27 194 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 A0A1W2PQ64 194 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 A0A1W2PQD8 194 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 TTLL13PA6NNM8 815 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 BTBD11A6QL63 1104 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 GCOM1H8Y6P7 765 aaPredicted RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 M0QX08 132 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 RNF113AO15541 343 aaKnown RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 STAMBPO95630 424 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 MYZAPP0CAP1 466 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 NAGAP17050 411 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 M6PRP20645 277 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 IL32P24001 234 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 ADKP55263 362 aaKnown RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 ST3GAL1Q11201 340 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 NMIQ13287 307 aaPredicted RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 DIXDC1Q155Q3 683 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 SNX30Q5VWJ9 437 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 FYB2Q5VWT5 728 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 FASTKD5Q7L8L6 764 aaKnown RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 RIBC1Q8N443 379 aaPredicted RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 CARNMT1Q8N4J0 409 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 PTCD2Q8WV60 388 aaKnown RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 HAUS8Q9BT25 410 aa9.11□□□□□ -0.95
USP3-211ENST00000559257 ASCC2Q9H1I8 757 aaPredicted RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 METTL5Q9NRN9 209 aaKnown RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 TDRKHQ9Y2W6 561 aaKnown RBP9.11□□□□□ -0.95
USP3-211ENST00000559257 SBNO1A3KN83 1393 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 CD109Q6YHK3 1445 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 PHF20L1A8MW92 1017 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 O00370 1275 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 CNOT3O75175 753 aaKnown RBP9.1□□□□□ -0.95
USP3-211ENST00000559257 ATP5HO75947 161 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 A1BGP04217 495 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 ANXA13P27216 316 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 CHKAP35790 457 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 RXRGP48443 463 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 POLR2FP61218 127 aaKnown RBP9.1□□□□□ -0.95
USP3-211ENST00000559257 CDONQ4KMG0 1287 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 DENND2CQ68D51 928 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 CADM3Q8N126 398 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 ARHGAP24Q8N264 748 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 AGGF1Q8N302 714 aaeCLIP9.1□□□□□ -0.95
USP3-211ENST00000559257 ARL6IP6Q8N6S5 226 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 KIAA1958Q8N8K9 716 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 NPLOC4Q8TAT6 608 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 GLMNQ92990 594 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 EME1Q96AY2 570 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 TMEM237Q96Q45 408 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 NUDCD1Q96RS6 583 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 USP28Q96RU2 1077 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 TTC1Q99614 292 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 CTRCQ99895 268 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 SDF4Q9BRK5 362 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 CCDC134Q9H6E4 229 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 THAP1Q9NVV9 213 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 MKL2Q9ULH7 1088 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 DNAJC16Q9Y2G8 782 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 STK38LQ9Y2H1 464 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 PASKQ96RG2 1323 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 PCDH11XQ9BZA7 1347 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 MROH1Q8NDA8 1641 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 RIMS2Q9UQ26 1411 aa9.1□□□□□ -0.95
USP3-211ENST00000559257 PABPC1P11940 636 aaKnown RBP9.09□□□□□ -0.95
USP3-211ENST00000559257 ALAS1P13196 640 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 ETS2P15036 469 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 HPDP32754 393 aaPredicted RBP9.09□□□□□ -0.95
USP3-211ENST00000559257 GTF2H1P32780 548 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 EPHA7Q15375 998 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 PDXDC1Q6P996 788 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 RFPL4BQ6ZWI9 263 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 ITIH5Q86UX2 942 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 TMTC1Q8IUR5 882 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 EIF1ADQ8N9N8 165 aaKnown RBP9.09□□□□□ -0.95
USP3-211ENST00000559257 FSIP1Q8NA03 581 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.09□□□□□ -0.95
USP3-211ENST00000559257 OSCP1Q8WVF1 389 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 MRPS27Q92552 414 aaKnown RBP9.09□□□□□ -0.95
USP3-211ENST00000559257 GPATCH3Q96I76 525 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 SHCBP1LQ9BZQ2 653 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 DPH5Q9H2P9 285 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 IGSF5Q9NSI5 407 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 KLHL3Q9UH77 587 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 STX8Q9UNK0 236 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 ARHGEF40Q8TER5 1519 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 ATP10DQ9P241 1426 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 A0A087WWV3 80 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 FUOMA2VDF0 154 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 HGSO14964 777 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms