RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 PARP10Q53GL7 1025 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 CCDC50Q8IVM0 306 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 PWWP2AQ96N64 755 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 RAB17Q9H0T7 212 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 AGAP1Q9UPQ3 857 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 TJP1Q07157 1748 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 RASGRF2O14827 1237 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 CAMTA2O94983 1202 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 ZC2HC1CQ53FD0 456 aaPredicted RBP12.28□□□□□ -0.44
LDLR-208ENST00000558518 FAM182BQ5T319 152 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 BHMT2Q9H2M3 363 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 PCIF1Q9H4Z3 704 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 PSTPIP2Q9H939 334 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 ACP6Q9NPH0 428 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 PALM3A6NDB9 673 aaPredicted RBP12.27□□□□□ -0.44
LDLR-208ENST00000558518 USP17L10C9JJH3 530 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 H0YGN5 161 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 RIMBP2O15034 1052 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 LGR5O75473 907 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 PON1P27169 355 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 CCNHP51946 323 aaPredicted RBP12.27□□□□□ -0.44
LDLR-208ENST00000558518 BYSLQ13895 437 aaKnown RBP12.27□□□□□ -0.44
LDLR-208ENST00000558518 YTHDF3Q7Z739 585 aaKnown RBP12.27□□□□□ -0.44
LDLR-208ENST00000558518 CPNE8Q86YQ8 564 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 TRIM59Q8IWR1 403 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 SYCP3Q8IZU3 236 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 MYCT1Q8N699 235 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 ZBTB10Q96DT7 871 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 PPP1R12CQ9BZL4 782 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 THAP2Q9H0W7 228 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 FAM114A2Q9NRY5 505 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 NFS1Q9Y697 457 aa12.27□□□□□ -0.44
LDLR-208ENST00000558518 CCDC169A6NNP5 214 aa12.27□□□□□ -0.45
LDLR-208ENST00000558518 AKAP3O75969 853 aa12.27□□□□□ -0.45
LDLR-208ENST00000558518 PCK1P35558 622 aa12.27□□□□□ -0.45
LDLR-208ENST00000558518 CCT6BQ92526 530 aa12.27□□□□□ -0.45
LDLR-208ENST00000558518 ARHGEF26Q96DR7 871 aa12.27□□□□□ -0.45
LDLR-208ENST00000558518 IQCDQ96DY2 449 aa12.27□□□□□ -0.45
LDLR-208ENST00000558518 DDX23Q9BUQ8 820 aaKnown RBP12.27□□□□□ -0.45
LDLR-208ENST00000558518 BSDC1Q9NW68 430 aaPredicted RBP12.27□□□□□ -0.45
LDLR-208ENST00000558518 PKD1L3Q7Z443 1732 aa12.27□□□□□ -0.45
LDLR-208ENST00000558518 LAMB4A4D0S4 1761 aa12.27□□□□□ -0.45
LDLR-208ENST00000558518 IGSF9BQ9UPX0 1349 aa12.27□□□□□ -0.45
LDLR-208ENST00000558518 DDX3XO00571 662 aaKnown RBP eCLIP12.26□□□□□ -0.458e-9■□□□□ 10
LDLR-208ENST00000558518 LCA5LO95447 670 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 TNFRSF8P28908 595 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 ALDH5A1P51649 535 aaPredicted RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 GNPTABQ3T906 1256 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 GRIPAP1Q4V328 841 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 INTS5Q6P9B9 1019 aaKnown RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 LRIG3Q6UXM1 1119 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 VSIG1Q86XK7 387 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 PALB2Q86YC2 1186 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 JAMLQ86YT9 394 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 CD302Q8IX05 232 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 MREGQ8N565 214 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 C1orf54Q8WWF1 131 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 NSRP1Q9H0G5 558 aaKnown RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 MTRF1LQ9UGC7 380 aaKnown RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 A0A1W2PRG0 241 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 M0R2N6 131 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 PCP11498 1178 aaKnown RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 NMT1P30419 496 aaKnown RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 DRAP1Q14919 205 aaPredicted RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 GALNT17Q6IS24 598 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 CYP4F22Q6NT55 531 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 ERICH1Q86X53 443 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 TPH2Q8IWU9 490 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 SCFD2Q8WU76 684 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 RNF25Q96BH1 459 aaPredicted RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 DNAJC19Q96DA6 116 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 FAM129AQ9BZQ8 928 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 RGL1Q9NZL6 768 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 ZBTB21Q9ULJ3 1066 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 MYH7BA7E2Y1 1941 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 KCPQ6ZWJ8 1503 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 KIF1AQ12756 1690 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 KIF1CO43896 1103 aaKnown RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 HOXA13P31271 388 aaPredicted RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 COG2Q14746 738 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 BARGINQ6ZT62 677 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 ZNF572Q7Z3I7 529 aaPredicted RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 IRF2BP2Q7Z5L9 587 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 SRRM1Q8IYB3 904 aaKnown RBP12.26□□□□□ -0.45
LDLR-208ENST00000558518 KRT35Q92764 455 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 SETDB2Q96T68 719 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 LRRC27Q9C0I9 530 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.26□□□□□ -0.456e-7■□□□□ 10.2
LDLR-208ENST00000558518 RASAL2Q9UJF2 1139 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 DNAJC12Q9UKB3 198 aa12.26□□□□□ -0.45
LDLR-208ENST00000558518 C6orf229H3BNL8 230 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 DDX39AO00148 427 aaKnown RBP12.25□□□□□ -0.45
LDLR-208ENST00000558518 ZBTB39O15060 712 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 MED24O75448 989 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 STX2P32856 288 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 TAF11Q15544 211 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 C2CD6Q53TS8 623 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 TBC1D9BQ66K14 1250 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 FMNL3Q8IVF7 1028 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 RUBCNQ92622 972 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms