RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 HS2ST1Q7LGA3 356 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 OTOP1Q7RTM1 612 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 SAMD3Q8N6K7 520 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 NACC1Q96RE7 527 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 DEFB129Q9H1M3 183 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 PARVGQ9HBI0 331 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 PDE11AQ9HCR9 933 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 ZNF70Q9UC06 446 aaPredicted RBP7.96□□□□□ -1.14
VPS13C-206ENST00000558338 DUSP10Q9Y6W6 482 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 ASTN1O14525 1302 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 SHTN1A0MZ66 631 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 POM121CA8CG34 1229 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 TCP10L2B9ZVM9 353 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 PRPF6O94906 941 aaKnown RBP7.95□□□□□ -1.14
VPS13C-206ENST00000558338 TFRCP02786 760 aaKnown RBP7.95□□□□□ -1.14
VPS13C-206ENST00000558338 CCDC172P0C7W6 258 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 MYBP10242 640 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 UCHL3P15374 230 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 FERP16591 822 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 RFX1P22670 979 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 HOXA13P31271 388 aaPredicted RBP7.95□□□□□ -1.14
VPS13C-206ENST00000558338 CASP5P51878 434 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 PSMC6P62333 389 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 CYP4A11Q02928 519 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 C2orf54Q08AI8 447 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 RAD51AP2Q09MP3 1159 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 PDAP1Q13442 181 aaKnown RBP7.95□□□□□ -1.14
VPS13C-206ENST00000558338 MYBPC2Q14324 1141 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 EPHA7Q15375 998 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 CEP55Q53EZ4 464 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 DCAF17Q5H9S7 520 aaPredicted RBP7.95□□□□□ -1.14
VPS13C-206ENST00000558338 KLHDC7AQ5VTJ3 777 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 NIPA1Q7RTP0 329 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 FAM133AQ8N9E0 248 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 SPATA4Q8NEY3 305 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 COG1Q8WTW3 980 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 TBC1D5Q92609 795 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 VTI1AQ96AJ9 217 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 RIT2Q99578 217 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 HSD17B14Q9BPX1 270 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 CRACR2AQ9BSW2 395 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS13C-206ENST00000558338 RUSC1Q9BVN2 902 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 GINM1Q9NU53 330 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 ZHX1Q9UKY1 873 aaPredicted RBP7.95□□□□□ -1.14
VPS13C-206ENST00000558338 INTUQ9ULD6 942 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 PCDHGC5Q9Y5F6 944 aa7.95□□□□□ -1.14
VPS13C-206ENST00000558338 LOC102724159A0A0B4J2E5 919 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 H3BQF6 201 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 ZNF185O15231 689 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 TLR2O60603 784 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 ASNSP08243 561 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 MAPTP10636 758 aaKnown RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 BCRP11274 1271 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 GUCY2CP25092 1073 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 ZNF131P52739 623 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 EPHB4P54760 987 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 NNTQ13423 1086 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 RRP1BQ14684 758 aaKnown RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 PPP2R5AQ15172 486 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 PWP2Q15269 919 aaKnown RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 C8orf74Q6P047 294 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 NFRKBQ6P4R8 1299 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 CCDC174Q6PII3 467 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 CCNI2Q6ZMN8 369 aaPredicted RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 C1orf186Q6ZWK4 172 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 FAM186BQ8IYM0 893 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 SPICE1Q8N0Z3 855 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 MYCT1Q8N699 235 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 TTLL6Q8N841 843 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 AGBL3Q8NEM8 1001 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 LMBR1Q8WVP7 490 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 TAF4BQ92750 862 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 DYDC2Q96IM9 177 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 PKNOX2Q96KN3 472 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 GMLQ99445 158 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 ZNF577Q9BSK1 485 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 WDR18Q9BV38 432 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 MAP3K20Q9NYL2 800 aaKnown RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 GCNT4Q9P109 453 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 FRMD4BQ9Y2L6 1034 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 CNTNAP1P78357 1384 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 A0A0A6YYK5 440 aaPredicted RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 ARHGEF35A5YM69 484 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 PDE2AO00408 941 aaPredicted RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 EML1O00423 815 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 C21orf2O43822 256 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 N4BP1O75113 896 aaKnown RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 AKAP3O75969 853 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 SLITRK3O94933 977 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 ZNF16P17020 682 aaPredicted RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 ERCC3P19447 782 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 PON1P27169 355 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 HOXD13P35453 343 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 CAP2P40123 477 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 ECE1P42892 770 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 JAG1P78504 1218 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 SF3B2Q13435 895 aaKnown RBP7.94□□□□□ -1.14
VPS13C-206ENST00000558338 KIAA0753Q2KHM9 967 aa7.94□□□□□ -1.14
VPS13C-206ENST00000558338 TCERG1LQ5VWI1 586 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms