RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PP2D1A8MPX8 630 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 ZBBXA8MT70 800 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 F13A1P00488 732 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 VTNP04004 478 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 GHRP10912 638 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 XRCC6P12956 609 aaKnown RBP eCLIP15.17■□□□□ 0.02
SHMT2-228ENST00000557302 RFC5P40937 340 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 DNM2P50570 870 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 POLGP54098 1239 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-228ENST00000557302 CNKSR3Q6P9H4 555 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 POTEGQ6S5H5 508 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 ZNF710Q8N1W2 664 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 ZNF579Q8NAF0 562 aaKnown RBP15.17■□□□□ 0.02
SHMT2-228ENST00000557302 PIGOQ8TEQ8 1089 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 SEPT8Q92599 483 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 CELF4Q9BZC1 486 aaKnown RBP15.17■□□□□ 0.02
SHMT2-228ENST00000557302 SCN5AQ14524 2016 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 KDM3AQ9Y4C1 1321 aa15.17■□□□□ 0.02
SHMT2-228ENST00000557302 BAIAP3O94812 1187 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 CEBPZQ03701 1054 aaKnown RBP15.16■□□□□ 0.02
SHMT2-228ENST00000557302 PKP1Q13835 747 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 LPIN1Q14693 890 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 PTPAQ15257 358 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 LRIT3Q3SXY7 679 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 PLEKHG4Q58EX7 1191 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 FBXO47Q5MNV8 452 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 RASIP1Q5U651 963 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 DBF4BQ8NFT6 615 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 ZNF396Q96N95 335 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-228ENST00000557302 USP28Q96RU2 1077 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 PPP1R16BQ96T49 567 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 DHX33Q9H6R0 707 aaKnown RBP15.16■□□□□ 0.02
SHMT2-228ENST00000557302 CXXC1Q9P0U4 656 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-228ENST00000557302 GINS2Q9Y248 185 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 SQORQ9Y6N5 450 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 COL6A3P12111 3177 aa15.16■□□□□ 0.02
SHMT2-228ENST00000557302 A0A087WWV3 80 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 GAS2O43903 313 aaKnown RBP15.15■□□□□ 0.02
SHMT2-228ENST00000557302 EFCAB14O75071 495 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 CDC25AP30304 524 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 RARRES1P49788 294 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 MKRN4PQ13434 485 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-228ENST00000557302 DRP2Q13474 957 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 IKBKEQ14164 716 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 EMC2Q15006 297 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 KIZQ2M2Z5 673 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 TSHZ1Q6ZSZ6 1077 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 USP38Q8NB14 1042 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 TET1Q8NFU7 2136 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 APBB2Q92870 758 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 AK8Q96MA6 479 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 SCLT1Q96NL6 688 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 IFIH1Q9BYX4 1025 aaKnown RBP15.15■□□□□ 0.02
SHMT2-228ENST00000557302 OSBPL7Q9BZF2 842 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 BMP2KQ9NSY1 1161 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-228ENST00000557302 SUCLA2Q9P2R7 463 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-228ENST00000557302 DBR1Q9UK59 544 aaKnown RBP15.15■□□□□ 0.02
SHMT2-228ENST00000557302 SLC4A7Q9Y6M7 1214 aa15.15■□□□□ 0.02
SHMT2-228ENST00000557302 ABHD14A-ACY1A0A1B0GW23 586 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 ARHGEF35A5YM69 484 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 GPR32O75388 356 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 DGAT1O75907 488 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 BRD1O95696 1058 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 MARCKSP29966 332 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-228ENST00000557302 LONP1P36776 959 aaKnown RBP15.14■□□□□ 0.01
SHMT2-228ENST00000557302 KCNJ6P48051 423 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 NASPP49321 788 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-228ENST00000557302 CRYBB1P53674 252 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-228ENST00000557302 NLRP11P59045 1033 aaKnown RBP15.14■□□□□ 0.01
SHMT2-228ENST00000557302 CDC42EP1Q00587 391 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 SLC39A14Q15043 492 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 ZRSR1Q15695 479 aaKnown RBP15.14■□□□□ 0.01
SHMT2-228ENST00000557302 ECM1Q16610 540 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 TCTN1Q2MV58 587 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 TCP11Q8WWU5 503 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 CDK5RAP3Q96JB5 506 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 OSMRQ99650 979 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 MTRQ99707 1265 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 MMTAG2Q9BU76 263 aaKnown RBP15.14■□□□□ 0.01
SHMT2-228ENST00000557302 ATP6V0A4Q9HBG4 840 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 DDX19AQ9NUU7 478 aaKnown RBP15.14■□□□□ 0.01
SHMT2-228ENST00000557302 KIAA1024Q9UPX6 916 aa15.14■□□□□ 0.01
SHMT2-228ENST00000557302 MORC2Q9Y6X9 1032 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-228ENST00000557302 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-228ENST00000557302 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-228ENST00000557302 USO1O60763 962 aaKnown RBP15.13■□□□□ 0.01
SHMT2-228ENST00000557302 CD52P31358 61 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 UBA7P41226 1012 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 GPC3P51654 580 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 PAK2Q13177 524 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 STK38Q15208 465 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 FOXD4L6Q3SYB3 417 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-228ENST00000557302 FOXD4L3Q6VB84 417 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-228ENST00000557302 CABP7Q86V35 215 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 RHPN2Q8IUC4 686 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 NLRP7Q8WX94 980 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 PSPC1Q8WXF1 523 aaKnown RBP15.13■□□□□ 0.01
SHMT2-228ENST00000557302 EVPLQ92817 2033 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 TMEM143Q96AN5 459 aa15.13■□□□□ 0.01
SHMT2-228ENST00000557302 ADAMTS10Q9H324 1103 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms