RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 DTHD1Q6ZMT9 781 aa11.95□□□□□ -0.5
LINC00239-201ENST00000556973 CATSPER3Q86XQ3 398 aa11.95□□□□□ -0.5
LINC00239-201ENST00000556973 LRRC71Q8N4P6 559 aa11.95□□□□□ -0.5
LINC00239-201ENST00000556973 SLC7A3Q8WY07 619 aa11.95□□□□□ -0.5
LINC00239-201ENST00000556973 MAP7D2Q96T17 732 aa11.95□□□□□ -0.5
LINC00239-201ENST00000556973 POLR3CQ9BUI4 534 aaPredicted RBP11.95□□□□□ -0.5
LINC00239-201ENST00000556973 ANKEF1Q9NU02 776 aa11.95□□□□□ -0.5
LINC00239-201ENST00000556973 LRWD1Q9UFC0 647 aa11.95□□□□□ -0.5
LINC00239-201ENST00000556973 MSRAQ9UJ68 235 aa11.95□□□□□ -0.5
LINC00239-201ENST00000556973 AKT3Q9Y243 479 aa11.95□□□□□ -0.5
LINC00239-201ENST00000556973 PTPRSQ13332 1948 aa11.95□□□□□ -0.5
LINC00239-201ENST00000556973 MICAL3Q7RTP6 2002 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 GRXCR1A8MXD5 290 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 ZBTB39O15060 712 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 GPR182O15218 404 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 STX6O43752 255 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 GAS2O43903 313 aaKnown RBP11.94□□□□□ -0.5
LINC00239-201ENST00000556973 AMHP03971 560 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 VTNP04004 478 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 CLCN3P51790 818 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 POLGP54098 1239 aaPredicted RBP11.94□□□□□ -0.5
LINC00239-201ENST00000556973 NLRP11P59045 1033 aaKnown RBP11.94□□□□□ -0.5
LINC00239-201ENST00000556973 ATP2C1P98194 919 aaPredicted RBP11.94□□□□□ -0.5
LINC00239-201ENST00000556973 MKRN4PQ13434 485 aaPredicted RBP11.94□□□□□ -0.5
LINC00239-201ENST00000556973 KIZQ2M2Z5 673 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 XKR9Q5GH70 373 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 ARL6IP4Q66PJ3 421 aaKnown RBP11.94□□□□□ -0.5
LINC00239-201ENST00000556973 HAUS3Q68CZ6 603 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 PLA2G4FQ68DD2 849 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 IGSF22Q8N9C0 903 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 ZNF579Q8NAF0 562 aaKnown RBP11.94□□□□□ -0.5
LINC00239-201ENST00000556973 NACC1Q96RE7 527 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 SH2D3AQ9BRG2 576 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 FTHL17Q9BXU8 183 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 PBX4Q9BYU1 374 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 ZSCAN16Q9H4T2 348 aaPredicted RBP11.94□□□□□ -0.5
LINC00239-201ENST00000556973 DHX33Q9H6R0 707 aaKnown RBP11.94□□□□□ -0.5
LINC00239-201ENST00000556973 AGO3Q9H9G7 860 aaKnown RBP11.94□□□□□ -0.5
LINC00239-201ENST00000556973 CDHR5Q9HBB8 845 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 GINS2Q9Y248 185 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 PCDHA11Q9Y5I1 949 aa11.94□□□□□ -0.5
LINC00239-201ENST00000556973 TMEM265A0A087WTH1 108 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 ENPP3O14638 875 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 MED24O75448 989 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 RPS6KA5O75582 802 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 BMP15O95972 392 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 DNAJB2P25686 324 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 GPC3P51654 580 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 PAK2Q13177 524 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 IL17AQ16552 155 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.93□□□□□ -0.5
LINC00239-201ENST00000556973 FERMT3Q86UX7 667 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 HERC6Q8IVU3 1022 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 TCP11Q8WWU5 503 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 TIFAQ96CG3 184 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 ADAMTS10Q9H324 1103 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 SUCLA2Q9P2R7 463 aaPredicted RBP11.93□□□□□ -0.5
LINC00239-201ENST00000556973 DBR1Q9UK59 544 aaKnown RBP11.93□□□□□ -0.5
LINC00239-201ENST00000556973 PADI3Q9ULW8 664 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 MTMR6Q9Y217 621 aa11.93□□□□□ -0.5
LINC00239-201ENST00000556973 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.92□□□□□ -0.5
LINC00239-201ENST00000556973 ASAP2O43150 1006 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 DGAT1O75907 488 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 EIF4BP23588 611 aaKnown RBP11.92□□□□□ -0.5
LINC00239-201ENST00000556973 CD52P31358 61 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 CCT6AP40227 531 aaKnown RBP11.92□□□□□ -0.5
LINC00239-201ENST00000556973 PBX2P40425 430 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 RARRES1P49788 294 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 RABGGTBP53611 331 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 DEFB103AP81534 67 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 NFX1Q12986 1120 aaKnown RBP11.92□□□□□ -0.5
LINC00239-201ENST00000556973 RESTQ13127 1097 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 DRP2Q13474 957 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 SF3A1Q15459 793 aaKnown RBP11.92□□□□□ -0.5
LINC00239-201ENST00000556973 ZNF697Q5TEC3 545 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 KRT79Q5XKE5 535 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 RHPN2Q8IUC4 686 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 DEFB123Q8N688 67 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 PIGOQ8TEQ8 1089 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 TMEM40Q8WWA1 233 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 TOP1MTQ969P6 601 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 CCDC43Q96MW1 224 aaKnown RBP11.92□□□□□ -0.5
LINC00239-201ENST00000556973 OSMRQ99650 979 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 MTRQ99707 1265 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 ZBED2Q9BTP6 218 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 INO80BQ9C086 356 aaPredicted RBP11.92□□□□□ -0.5
LINC00239-201ENST00000556973 SEMA6BQ9H3T3 888 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 SLC28A3Q9HAS3 691 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 ERVK-5Q9HDB9 667 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 ST3GAL5Q9UNP4 418 aa11.92□□□□□ -0.5
LINC00239-201ENST00000556973 NOC2LQ9Y3T9 749 aaKnown RBP11.92□□□□□ -0.5
LINC00239-201ENST00000556973 LAMA3Q16787 3333 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 A0A087WWV3 80 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 TLL1O43897 1013 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 GJB5O95377 273 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 RTN4RL1Q86UN2 441 aaPredicted RBP11.91□□□□□ -0.5
LINC00239-201ENST00000556973 ZNF410Q86VK4 478 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 MYOCDQ8IZQ8 938 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 KCTD17Q8N5Z5 321 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 SNX29Q8TEQ0 813 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms