RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 VPS11Q9H270 941 aa7.35□□□□□ -1.23
SYNE2-216ENST00000555002 CTNND1O60716 968 aaKnown RBP7.35□□□□□ -1.23
SYNE2-216ENST00000555002 GFAPP14136 432 aa7.35□□□□□ -1.23
SYNE2-216ENST00000555002 BCAS4Q8TDM0 211 aa7.35□□□□□ -1.23
SYNE2-216ENST00000555002 MRPS15P82914 257 aaKnown RBP7.35□□□□□ -1.23
SYNE2-216ENST00000555002 NR5A1Q13285 461 aa7.35□□□□□ -1.23
SYNE2-216ENST00000555002 FASTKD1Q53R41 847 aaKnown RBP7.35□□□□□ -1.23
SYNE2-216ENST00000555002 DALRD3Q5D0E6 543 aaKnown RBP7.35□□□□□ -1.23
SYNE2-216ENST00000555002 SPDYAQ5MJ70 313 aa7.35□□□□□ -1.23
SYNE2-216ENST00000555002 ATP6V0A4Q9HBG4 840 aa7.35□□□□□ -1.23
SYNE2-216ENST00000555002 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.34□□□□□ -1.23
SYNE2-216ENST00000555002 ASZ1Q8WWH4 475 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 SEC31AO94979 1220 aaKnown RBP7.34□□□□□ -1.23
SYNE2-216ENST00000555002 PYGBP11216 843 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 ESRRAP11474 423 aaPredicted RBP7.34□□□□□ -1.23
SYNE2-216ENST00000555002 TRIM32Q13049 653 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 KLHL24Q6TFL4 600 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 PLEKHA8Q96JA3 519 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 DEUP1Q05D60 604 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 PTGDRQ13258 359 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 ZNF280CQ8ND82 737 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 MYCBPQ99417 103 aaPredicted RBP7.34□□□□□ -1.23
SYNE2-216ENST00000555002 SGO1Q5FBB7 561 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 C16orf62Q7Z3J2 963 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 ADNPQ9H2P0 1102 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 AIPL1Q9NZN9 384 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 JRKLQ9Y4A0 524 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 TBC1D12O60347 775 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 SLC16A1P53985 500 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 ZNF699Q32M78 642 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 C6orf118Q5T5N4 469 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 LRRC31Q6UY01 552 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 SH3BP5LQ7L8J4 393 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 PLD3Q8IV08 490 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 AGR3Q8TD06 166 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 DBNLQ9UJU6 430 aaKnown RBP7.34□□□□□ -1.23
SYNE2-216ENST00000555002 FBXO2Q9UK22 296 aaPredicted RBP7.34□□□□□ -1.23
SYNE2-216ENST00000555002 H0Y3Z8 333 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 PGRMC1O00264 195 aaKnown RBP7.34□□□□□ -1.23
SYNE2-216ENST00000555002 VN1R5Q7Z5H4 357 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 KRT77Q7Z794 578 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 INPP5DQ92835 1189 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 RNF103-CHMP3A0A140T963 221 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 EIF2AK2P19525 551 aaKnown RBP7.34□□□□□ -1.23
SYNE2-216ENST00000555002 AMNQ9BXJ7 453 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 LZTS1Q9Y250 596 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 TTLL1O95922 423 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 ERICH1Q86X53 443 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 MED23Q9ULK4 1368 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 SYNJ1O43426 1573 aa7.34□□□□□ -1.23
SYNE2-216ENST00000555002 SEC24DO94855 1032 aaPredicted RBP7.34□□□□□ -1.24
SYNE2-216ENST00000555002 CYP27A1Q02318 531 aa7.34□□□□□ -1.24
SYNE2-216ENST00000555002 GABPB1Q06547 395 aaPredicted RBP7.34□□□□□ -1.24
SYNE2-216ENST00000555002 RMDN1Q96DB5 314 aa7.34□□□□□ -1.24
SYNE2-216ENST00000555002 ZNF668Q96K58 619 aaPredicted RBP7.34□□□□□ -1.24
SYNE2-216ENST00000555002 AGBL1Q96MI9 1066 aa7.34□□□□□ -1.24
SYNE2-216ENST00000555002 MRPL47Q9HD33 250 aaKnown RBP7.34□□□□□ -1.24
SYNE2-216ENST00000555002 PALD1Q9ULE6 856 aa7.34□□□□□ -1.24
SYNE2-216ENST00000555002 ARHGAP26Q9UNA1 814 aa7.34□□□□□ -1.24
SYNE2-216ENST00000555002 EIF4E1BA6NMX2 242 aaKnown RBP7.33□□□□□ -1.24
SYNE2-216ENST00000555002 KDM1AO60341 852 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 RLBP1P12271 317 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 SMARCA1P28370 1054 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 SOX11P35716 441 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 MXI1P50539 228 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 ZNF235Q14590 738 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 CENPUQ71F23 418 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 ADCK1Q86TW2 530 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 KBTBD3Q8NAB2 608 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 POTEB3A0JP26 581 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 COPEO14579 308 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 DAB1O75553 588 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 LCP1P13796 627 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 MRPS25P82663 173 aaKnown RBP7.33□□□□□ -1.24
SYNE2-216ENST00000555002 POTEBQ6S5H4 581 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 TRIM48Q8IWZ4 208 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.33□□□□□ -1.24
SYNE2-216ENST00000555002 TNKSO95271 1327 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 ZC3H4Q9UPT8 1303 aaKnown RBP7.33□□□□□ -1.24
SYNE2-216ENST00000555002 COPS2P61201 443 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 MAP3K10Q02779 954 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 PDCLQ13371 301 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 VEPH1Q14D04 833 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 FSCBQ5H9T9 825 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 CYGBQ8WWM9 190 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 TMEM106CQ9BVX2 250 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 SLC52A2Q9HAB3 445 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 FANCLQ9NW38 375 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 HPCAP84074 193 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 THNSL1Q8IYQ7 743 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 ZC3H15Q8WU90 426 aaKnown RBP7.33□□□□□ -1.24
SYNE2-216ENST00000555002 IP6K1Q92551 441 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 ACTR5Q9H9F9 607 aaPredicted RBP7.33□□□□□ -1.24
SYNE2-216ENST00000555002 ABCC4O15439 1325 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 M0QYV0 167 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 SUPT3HO75486 399 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 HDAC4P56524 1084 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 COA7Q96BR5 231 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 UNC45AQ9H3U1 944 aa7.33□□□□□ -1.24
SYNE2-216ENST00000555002 MLXIPLQ9NP71 852 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms