RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 GINM1Q9NU53 330 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 KCNG1Q9UIX4 513 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 ZMYM2Q9UBW7 1377 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 TGFB1I1O43294 461 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 SLC26A4O43511 780 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 CCDC43Q96MW1 224 aaKnown RBP12.81□□□□□ -0.36
SHMT2-212ENST00000554467 PAGR1Q9BTK6 254 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 NUP58Q9BVL2 599 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 LACRTQ9GZZ8 138 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 ARHGAP20Q9P2F6 1191 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 STK24Q9Y6E0 443 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 FRMPD4Q14CM0 1322 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 GOLGA6L9A6NEM1 432 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 IRF6O14896 467 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 RGS20O76081 388 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 P4HBP07237 508 aaKnown RBP12.81□□□□□ -0.36
SHMT2-212ENST00000554467 CEP63Q96MT8 703 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 FIZ1Q96SL8 496 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 TEX13BQ9BXU2 312 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 ADARB2Q9NS39 739 aaKnown RBP12.81□□□□□ -0.36
SHMT2-212ENST00000554467 ARMCX3Q9UH62 379 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-212ENST00000554467 RLFQ13129 1914 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 SBF1O95248 1867 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 DOCK5Q9H7D0 1870 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 C19orf81C9J6K1 198 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 ENC1O14682 589 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 BACH1O14867 736 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 ZNF263O14978 683 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 NOL4O94818 638 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 BCRP11274 1271 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 SLC9A1P19634 815 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 MAP3K9P80192 1104 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 KIAA1328Q86T90 577 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 KIFC3Q9BVG8 833 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 CYP39A1Q9NYL5 469 aa12.81□□□□□ -0.36
SHMT2-212ENST00000554467 PHIPQ8WWQ0 1821 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 YWHABP31946 246 aaKnown RBP12.8□□□□□ -0.36
SHMT2-212ENST00000554467 EIF4A3P38919 411 aaKnown RBP12.8□□□□□ -0.36
SHMT2-212ENST00000554467 QARSP47897 775 aaKnown RBP12.8□□□□□ -0.36
SHMT2-212ENST00000554467 MAPK7Q13164 816 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 MEA1Q16626 185 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 PLEKHA4Q9H4M7 779 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 PCIF1Q9H4Z3 704 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 MYH11P35749 1972 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 MACROD2A1Z1Q3 448 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 K7ENM7 598 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 RARRES1P49788 294 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 LONRF2Q1L5Z9 754 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 EAPPQ56P03 285 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-212ENST00000554467 ZNF720Q7Z2F6 126 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 VSIG10LQ86VR7 867 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 GPR161Q8N6U8 529 aaKnown RBP12.8□□□□□ -0.36
SHMT2-212ENST00000554467 BAP1Q92560 729 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 CCDC42Q96M95 316 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 PDE11AQ9HCR9 933 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 ARFGAP3Q9NP61 516 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 TYW1Q9NV66 732 aaKnown RBP12.8□□□□□ -0.36
SHMT2-212ENST00000554467 VPS18Q9P253 973 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 TRAF3IP3Q9Y228 551 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 CSADQ9Y600 493 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 PARP14Q460N5 1801 aa12.8□□□□□ -0.36
SHMT2-212ENST00000554467 PDXKO00764 312 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 CALUO43852 315 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-212ENST00000554467 EDRF1Q3B7T1 1238 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 XKR9Q5GH70 373 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 CCDC122Q5T0U0 273 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 GJB7Q6PEY0 223 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 EEPD1Q7L9B9 569 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 SYCP3Q8IZU3 236 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 ANKRD13CQ8N6S4 541 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 RETREG2Q8NC44 543 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 ZSWIM2Q8NEG5 633 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 C12orf42Q96LP6 360 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 ACAD9Q9H845 621 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.79□□□□□ -0.363e-6■■■■■ 44
SHMT2-212ENST00000554467 OLFML3Q9NRN5 406 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 BTBD7Q9P203 1132 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 DNAH12Q6ZR08 3092 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 TUBB4AP04350 444 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 RHOXF2BP0C7M4 288 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 GAP43P17677 238 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 CCND2P30279 289 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 CORO7P57737 925 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 TDRD12Q587J7 1177 aaKnown RBP12.79□□□□□ -0.36
SHMT2-212ENST00000554467 NLRX1Q86UT6 975 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 DNAAF5Q86Y56 855 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 ANKRD35Q8N283 1001 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 RHOXF2Q9BQY4 288 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 DEF6Q9H4E7 631 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 SUGCTQ9HAC7 445 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 HDAC6Q9UBN7 1215 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 PPP1R12BO60237 982 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-212ENST00000554467 TRIM49P0CI25 452 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 TRIM49CP0CI26 452 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 RAPGEF1Q13905 1077 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 FAM102BQ5T8I3 360 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 LRRC31Q6UY01 552 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 NSUN6Q8TEA1 469 aaKnown RBP12.79□□□□□ -0.36
SHMT2-212ENST00000554467 TBC1D22BQ9NU19 505 aa12.79□□□□□ -0.36
SHMT2-212ENST00000554467 ADAMTS5Q9UNA0 930 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms