RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 HTR3DQ70Z44 454 aa3.88□□□□□ -1.79
SRP54-204ENST00000553923 DPH6Q7L8W6 267 aa3.88□□□□□ -1.79
SRP54-204ENST00000553923 NOSTRINQ8IVI9 506 aa3.88□□□□□ -1.79
SRP54-204ENST00000553923 ST13P5Q8NFI4 369 aaPredicted RBP3.88□□□□□ -1.79
SRP54-204ENST00000553923 ASB15Q8WXK1 588 aa3.88□□□□□ -1.79
SRP54-204ENST00000553923 LENG9Q96B70 501 aa3.88□□□□□ -1.79
SRP54-204ENST00000553923 MIEF2Q96C03 454 aa3.88□□□□□ -1.79
SRP54-204ENST00000553923 NAF1Q96HR8 494 aaKnown RBP3.88□□□□□ -1.79
SRP54-204ENST00000553923 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.88□□□□□ -1.79
SRP54-204ENST00000553923 CATSPERZQ9NTU4 200 aa3.88□□□□□ -1.79
SRP54-204ENST00000553923 PCDHA8Q9Y5H6 950 aa3.88□□□□□ -1.79
SRP54-204ENST00000553923 COL4A3Q01955 1670 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 AQP7O14520 342 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 KCNK3O14649 394 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 KRT15P19012 456 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 NR4A1P22736 598 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 MAN2A2P49641 1150 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 RABGGTBP53611 331 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 KRTAP10-11P60412 298 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 ATP2C1P98194 919 aaPredicted RBP3.87□□□□□ -1.79
SRP54-204ENST00000553923 FSTL4Q6MZW2 842 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 MAMDC2Q7Z304 686 aaPredicted RBP3.87□□□□□ -1.79
SRP54-204ENST00000553923 MCF2L2Q86YR7 1114 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 HAS1Q92839 578 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 PTPRN2Q92932 1015 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 ZNF764Q96H86 408 aaPredicted RBP3.87□□□□□ -1.79
SRP54-204ENST00000553923 GPHA2Q96T91 129 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 NRDE2Q9H7Z3 1164 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 TRPS1Q9UHF7 1281 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 VWA7Q9Y334 891 aa3.87□□□□□ -1.79
SRP54-204ENST00000553923 A0A1W2PRX2 142 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 KLRG2A4D1S0 409 aaPredicted RBP3.86□□□□□ -1.79
SRP54-204ENST00000553923 C2orf78A6NCI8 922 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 GRXCR1A8MXD5 290 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 ATXN1P54253 815 aaKnown RBP3.86□□□□□ -1.79
SRP54-204ENST00000553923 COLEC12Q5KU26 742 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 C1QL3Q5VWW1 255 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 ANKS3Q6ZW76 656 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 VRK3Q8IV63 474 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 DLG3Q92796 817 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 LPPQ93052 612 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 SLC6A15Q9H2J7 730 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 FAM184BQ9ULE4 1060 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 ASB1Q9Y576 335 aa3.86□□□□□ -1.79
SRP54-204ENST00000553923 PRAMEF22A3QJZ6 481 aa3.85□□□□□ -1.79
SRP54-204ENST00000553923 GRID2IPA4D2P6 1211 aa3.85□□□□□ -1.79
SRP54-204ENST00000553923 GOLGA6L22H0YM25 854 aa3.85□□□□□ -1.79
SRP54-204ENST00000553923 ADCY3O60266 1144 aa3.85□□□□□ -1.79
SRP54-204ENST00000553923 SDHAP31040 664 aa3.85□□□□□ -1.79
SRP54-204ENST00000553923 PTGS2P35354 604 aa3.85□□□□□ -1.79
SRP54-204ENST00000553923 CNGB1Q14028 1251 aaPredicted RBP3.85□□□□□ -1.79
SRP54-204ENST00000553923 CRY1Q16526 586 aa3.85□□□□□ -1.79
SRP54-204ENST00000553923 FAM111BQ6SJ93 734 aa3.85□□□□□ -1.79
SRP54-204ENST00000553923 MTDHQ86UE4 582 aaKnown RBP3.85□□□□□ -1.79
SRP54-204ENST00000553923 LRRC47Q8N1G4 583 aaKnown RBP3.85□□□□□ -1.79
SRP54-204ENST00000553923 SLC25A43Q8WUT9 341 aaPredicted RBP3.85□□□□□ -1.79
SRP54-204ENST00000553923 ZNF669Q96BR6 464 aaPredicted RBP3.85□□□□□ -1.79
SRP54-204ENST00000553923 BBC3Q96PG8 261 aaPredicted RBP3.85□□□□□ -1.79
SRP54-204ENST00000553923 MLST8Q9BVC4 326 aa3.85□□□□□ -1.79
SRP54-204ENST00000553923 PACSIN3Q9UKS6 424 aa3.85□□□□□ -1.79
SRP54-204ENST00000553923 CCDC66A2RUB6 948 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 FAM20BO75063 409 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 RHOBTB3O94955 611 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 SRGAP2CP0DJJ0 459 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 CSRP2Q16527 193 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 RABL3Q5HYI8 236 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 FOXB2Q5VYV0 432 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 KLHDC10Q6PID8 442 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 ZNF662Q6ZS27 426 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 GAREM2Q75VX8 874 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 FOXRED1Q96CU9 486 aaPredicted RBP3.84□□□□□ -1.79
SRP54-204ENST00000553923 SLC7A6OSQ96CW6 309 aaPredicted RBP3.84□□□□□ -1.79
SRP54-204ENST00000553923 GBP4Q96PP9 640 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 TINF2Q9BSI4 451 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 SPATA9Q9BWV2 254 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 GPR87Q9BY21 358 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 HS3ST4Q9Y661 456 aa3.84□□□□□ -1.79
SRP54-204ENST00000553923 ZBTB7CA1YPR0 619 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 SCDO00767 359 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 FOXP2O15409 715 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 NUDT3O95989 172 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 APEX1P27695 318 aaKnown RBP3.83□□□□□ -1.8
SRP54-204ENST00000553923 ANTXR2P58335 489 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 C21orf58P58505 322 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 MRPS21P82921 87 aaKnown RBP3.83□□□□□ -1.8
SRP54-204ENST00000553923 GUCY1A3Q02108 690 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 ELAVL1Q15717 326 aaKnown RBP3.83□□□□□ -1.8
SRP54-204ENST00000553923 CATSPEREQ5SY80 951 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 RTN4RL1Q86UN2 441 aaPredicted RBP3.83□□□□□ -1.8
SRP54-204ENST00000553923 GSPT2Q8IYD1 628 aaKnown RBP3.83□□□□□ -1.8
SRP54-204ENST00000553923 WDR48Q8TAF3 677 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 NKD2Q969F2 451 aaPredicted RBP3.83□□□□□ -1.8
SRP54-204ENST00000553923 RPL10LQ96L21 214 aaKnown RBP3.83□□□□□ -1.8
SRP54-204ENST00000553923 MNTQ99583 582 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 SYNPO2LQ9H987 977 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 KCNH7Q9NS40 1196 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 FZD1Q9UP38 647 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 PCDHA9Q9Y5H5 950 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 B3GALT1Q9Y5Z6 326 aa3.83□□□□□ -1.8
SRP54-204ENST00000553923 UBE2QL1A1L167 161 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms