RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 JADE2Q9NQC1 790 aa4.78□□□□□ -1.64
VRK1-202ENST00000553683 KCMF1Q9P0J7 381 aa4.78□□□□□ -1.64
VRK1-202ENST00000553683 PPP4R1LQ9P1A2 415 aa4.78□□□□□ -1.64
VRK1-202ENST00000553683 PRKAB1Q9Y478 270 aa4.78□□□□□ -1.64
VRK1-202ENST00000553683 ZNF536O15090 1300 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 NPEPPSL1A6NEC2 478 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 ZEB2O60315 1214 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 PDE8AO60658 829 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 CNOT4O95628 575 aaKnown RBP4.77□□□□□ -1.65
VRK1-202ENST00000553683 CD40P25942 277 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 LSSP48449 732 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 KPNA1P52294 538 aaPredicted RBP4.77□□□□□ -1.65
VRK1-202ENST00000553683 SMAD3P84022 425 aaKnown RBP4.77□□□□□ -1.65
VRK1-202ENST00000553683 SLFN12LQ6IEE8 588 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 KANSL1Q7Z3B3 1105 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 DNERQ8NFT8 737 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 RPGRQ92834 1020 aaKnown RBP4.77□□□□□ -1.65
VRK1-202ENST00000553683 GFM2Q969S9 779 aaKnown RBP4.77□□□□□ -1.65
VRK1-202ENST00000553683 C1QTNF3Q9BXJ4 246 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 HAPLN2Q9GZV7 340 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 WNT8AQ9H1J5 351 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 OR10A2Q9H208 303 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 SEMA4AQ9H3S1 761 aa4.77□□□□□ -1.65
VRK1-202ENST00000553683 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.77□□□□□ -1.65
VRK1-202ENST00000553683 MYCLP1P12525 358 aaPredicted RBP4.76□□□□□ -1.65
VRK1-202ENST00000553683 SLC9A1P19634 815 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 MEOX1P50221 254 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 RAC3P60763 192 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 SLC6A3Q01959 620 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 PCBP1Q15365 356 aaKnown RBP eCLIP4.76□□□□□ -1.65
VRK1-202ENST00000553683 DGKDQ16760 1214 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 C21orf62-AS1Q17RA5 79 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 AGBL4Q5VU57 503 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 USP30Q70CQ3 517 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 C11orf74Q86VG3 221 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 CIR1Q86X95 450 aaPredicted RBP4.76□□□□□ -1.65
VRK1-202ENST00000553683 C7orf31Q8N865 590 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 ZNF610Q8N9Z0 462 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 BORCS6Q96GS4 357 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 PITHD1Q9GZP4 211 aaPredicted RBP4.76□□□□□ -1.65
VRK1-202ENST00000553683 MEGF9Q9H1U4 602 aa4.76□□□□□ -1.65
VRK1-202ENST00000553683 SAE1Q9UBE0 346 aaPredicted RBP4.76□□□□□ -1.65
VRK1-202ENST00000553683 PATE3B3GLJ2 98 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 ARHGAP6O43182 974 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 H2AFYO75367 372 aaKnown RBP4.75□□□□□ -1.65
VRK1-202ENST00000553683 ZNF888P0CJ79 500 aaPredicted RBP4.75□□□□□ -1.65
VRK1-202ENST00000553683 BPIP17213 487 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 PTX3P26022 381 aaPredicted RBP4.75□□□□□ -1.65
VRK1-202ENST00000553683 LSP1P33241 339 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 STAT3P40763 770 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 MAGEA10P43363 369 aaPredicted RBP4.75□□□□□ -1.65
VRK1-202ENST00000553683 KCNQ1P51787 676 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 SEPT7Q16181 437 aaKnown RBP4.75□□□□□ -1.65
VRK1-202ENST00000553683 KIAA1841Q6NSI8 718 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 ESRP1Q6NXG1 681 aaKnown RBP4.75□□□□□ -1.65
VRK1-202ENST00000553683 KLHDC10Q6PID8 442 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 DDX46Q7L014 1031 aaKnown RBP4.75□□□□□ -1.65
VRK1-202ENST00000553683 RNF180Q86T96 592 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 THNSL2Q86YJ6 484 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 RTKN2Q8IZC4 609 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 BCL6BQ8N143 479 aaPredicted RBP4.75□□□□□ -1.65
VRK1-202ENST00000553683 CHTF18Q8WVB6 975 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 RSAD2Q8WXG1 361 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 ERCC4Q92889 916 aaPredicted RBP4.75□□□□□ -1.65
VRK1-202ENST00000553683 NEIL1Q96FI4 390 aaPredicted RBP4.75□□□□□ -1.65
VRK1-202ENST00000553683 TUBGCP5Q96RT8 1024 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 LMF1Q96S06 567 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 OSBPL6Q9BZF3 934 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 ZMAT4Q9H898 229 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 CAAP1Q9H8G2 361 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 TOMM22Q9NS69 142 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 SYNPO2Q9UMS6 1093 aa4.75□□□□□ -1.65
VRK1-202ENST00000553683 A0A0A6YYJ9 748 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 ZNF891A8MT65 544 aaPredicted RBP4.74□□□□□ -1.65
VRK1-202ENST00000553683 C1QTNF3-AMACRE9PGA6 284 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 GPR42O15529 346 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 TGM5O43548 720 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 BRINP1O60477 761 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 FKBP9O95302 570 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 ADRB1P08588 477 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 VIL1P09327 827 aaKnown RBP4.74□□□□□ -1.65
VRK1-202ENST00000553683 SOX5P35711 763 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 RPS19P39019 145 aaKnown RBP4.74□□□□□ -1.65
VRK1-202ENST00000553683 ADCY8P40145 1251 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 MRE11P49959 708 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 ADCY2Q08462 1091 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 PCOLCEQ15113 449 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 MAN2A1Q16706 1144 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 CCDC178Q5BJE1 867 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 ESPNLQ6ZVH7 1005 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 FKBP9P1Q75LS8 142 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 GPR155Q7Z3F1 870 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 KRT26Q7Z3Y9 468 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 NXPE1Q8N323 547 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 OR5AN1Q8NGI8 311 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 NELFAQ9H3P2 528 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 THG1LQ9NWX6 298 aaKnown RBP4.74□□□□□ -1.65
VRK1-202ENST00000553683 SMPD4Q9NXE4 827 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 DENND2AQ9ULE3 1009 aa4.74□□□□□ -1.65
VRK1-202ENST00000553683 NR2E1Q9Y466 385 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms