RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 MAFO75444 373 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-204ENST00000553324 LYPLA2O95372 231 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 VTNP04004 478 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 YWHABP31946 246 aaKnown RBP17.17■□□□□ 0.34
SHMT2-204ENST00000553324 CLCN3P51790 818 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 NLRP11P59045 1033 aaKnown RBP17.17■□□□□ 0.34
SHMT2-204ENST00000553324 HTRA4P83105 476 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-204ENST00000553324 NFX1Q12986 1120 aaKnown RBP17.17■□□□□ 0.34
SHMT2-204ENST00000553324 ZNF174Q15697 407 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 KIZQ2M2Z5 673 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 MCTP1Q6DN14 999 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 TPH2Q8IWU9 490 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 LRRC71Q8N4P6 559 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 SLC7A3Q8WY07 619 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 DYDC2Q96IM9 177 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 CEP170P1Q96L14 293 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 YME1L1Q96TA2 773 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 RGL1Q9NZL6 768 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 STK24Q9Y6E0 443 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 COL6A3P12111 3177 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 WNT7AO00755 349 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 GAS2O43903 313 aaKnown RBP17.16■□□□□ 0.34
SHMT2-204ENST00000553324 UPP2O95045 317 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 OR52Z1P0C646 297 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 XRCC6P12956 609 aaKnown RBP eCLIP17.16■□□□□ 0.34
SHMT2-204ENST00000553324 RFC5P40937 340 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 TAP1Q03518 808 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 TMEM266Q2M3C6 531 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 LARP1BQ659C4 914 aaKnown RBP17.16■□□□□ 0.34
SHMT2-204ENST00000553324 FAM117BQ6P1L5 589 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 TMCO2Q7Z6W1 182 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-204ENST00000553324 ERMNQ8TAM6 284 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 CEP89Q96ST8 783 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 OSMRQ99650 979 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 INO80BQ9C086 356 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-204ENST00000553324 TSPYL2Q9H2G4 693 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-204ENST00000553324 TMEM60Q9H2L4 133 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 ADAMTS10Q9H324 1103 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 PRDM12Q9H4Q4 367 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 CDHR5Q9HBB8 845 aa17.16■□□□□ 0.34
SHMT2-204ENST00000553324 NOC2LQ9Y3T9 749 aaKnown RBP17.16■□□□□ 0.34
SHMT2-204ENST00000553324 LAD1O00515 517 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 STAG3L1P0CL83 205 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 EIF4BP23588 611 aaKnown RBP17.15■□□□□ 0.34
SHMT2-204ENST00000553324 TECP42680 631 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 POLGP54098 1239 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-204ENST00000553324 CYP4A11Q02928 519 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 CUL4AQ13619 759 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 CTTNQ14247 550 aaKnown RBP17.15■□□□□ 0.34
SHMT2-204ENST00000553324 RILPL1Q5EBL4 403 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 SCLT1Q96NL6 688 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 TGS1Q96RS0 853 aaKnown RBP17.15■□□□□ 0.34
SHMT2-204ENST00000553324 GCOM2Q9BZD3 368 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-204ENST00000553324 RAB34Q9BZG1 259 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 ERVK-5Q9HDB9 667 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 C1orf112Q9NSG2 853 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 ANKEF1Q9NU02 776 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 SUCLA2Q9P2R7 463 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-204ENST00000553324 ST3GAL5Q9UNP4 418 aa17.15■□□□□ 0.34
SHMT2-204ENST00000553324 MYH9P35579 1960 aaKnown RBP17.15■□□□□ 0.34
SHMT2-204ENST00000553324 DENND3A2RUS2 1198 aa17.14■□□□□ 0.33
SHMT2-204ENST00000553324 PDCP20941 246 aa17.14■□□□□ 0.33
SHMT2-204ENST00000553324 GPC3P51654 580 aa17.14■□□□□ 0.33
SHMT2-204ENST00000553324 PDIA5Q14554 519 aa17.14■□□□□ 0.33
SHMT2-204ENST00000553324 XKR9Q5GH70 373 aa17.14■□□□□ 0.33
SHMT2-204ENST00000553324 ZNF410Q86VK4 478 aa17.14■□□□□ 0.33
SHMT2-204ENST00000553324 SP7Q8TDD2 431 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-204ENST00000553324 TCP11Q8WWU5 503 aa17.14■□□□□ 0.33
SHMT2-204ENST00000553324 NLRP7Q8WX94 980 aa17.14■□□□□ 0.33
SHMT2-204ENST00000553324 SAMD11Q96NU1 681 aa17.14■□□□□ 0.33
SHMT2-204ENST00000553324 DHX33Q9H6R0 707 aaKnown RBP17.14■□□□□ 0.33
SHMT2-204ENST00000553324 TUFT1Q9NNX1 390 aa17.14■□□□□ 0.33
SHMT2-204ENST00000553324 WRAP73Q9P2S5 460 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-204ENST00000553324 LCHNA4D1U4 455 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 LINC01553A4QN01 128 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 TMEM150BA6NC51 233 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 ASAP2O43150 1006 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 DARSP14868 501 aaKnown RBP17.13■□□□□ 0.33
SHMT2-204ENST00000553324 ZSCAN20P17040 1043 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-204ENST00000553324 MUTP22033 750 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 NPEPPSP55786 919 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 ERVK-21P61565 698 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 PLA2G4FQ68DD2 849 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 SLC24A5Q71RS6 500 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 RTN4RL1Q86UN2 441 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-204ENST00000553324 NPAS4Q8IUM7 802 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 MAFAQ8NHW3 353 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-204ENST00000553324 TMEM40Q8WWA1 233 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 ARNTL2Q8WYA1 636 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 INTS4Q96HW7 963 aaKnown RBP17.13■□□□□ 0.33
SHMT2-204ENST00000553324 CCDC43Q96MW1 224 aaKnown RBP17.13■□□□□ 0.33
SHMT2-204ENST00000553324 PPP1R16BQ96T49 567 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 SH2D3AQ9BRG2 576 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 POLR3CQ9BUI4 534 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-204ENST00000553324 TMX1Q9H3N1 280 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 RGS18Q9NS28 235 aa17.13■□□□□ 0.33
SHMT2-204ENST00000553324 GTPBP6O43824 516 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-204ENST00000553324 POU3F3P20264 500 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-204ENST00000553324 IGFBP4P22692 258 aa17.12■□□□□ 0.33
SHMT2-204ENST00000553324 SARSP49591 514 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms