RNA–Protein interactions for RNA: ENST00000553154.5

CALCOCO1-222, Transcript of calcium binding and coiled-coil domain 1, human

TSL 2

Gene CALCOCO1, Length 566 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALCOCO1-222	ENST00000553154	LINC01599	Q8WXQ3	324 aa		11.32	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	PNMA5	Q96PV4	448 aa		11.32	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	USP28	Q96RU2	1077 aa		11.32	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	CELF4	Q9BZC1	486 aa	Known RBP	11.32	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.32	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	FBXO2	Q9UK22	296 aa	Predicted RBP	11.32	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	DBR1	Q9UK59	544 aa	Known RBP	11.32	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	CLIC4	Q9Y696	253 aa		11.32	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	PRUNE2	Q8WUY3	3088 aa		11.32	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	TET1	Q8NFU7	2136 aa		11.32	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	DDX11L8	A8MPP1	907 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	MARCH6	O60337	910 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	BRD1	O95696	1058 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	BMP15	O95972	392 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	F13A1	P00488	732 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	ZSCAN22	P10073	491 aa	Predicted RBP	11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	GHR	P10912	638 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	RFC5	P40937	340 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	GPC3	P51654	580 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	WDR5	P61964	334 aa	Known RBP	11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	SMAD3	P84022	425 aa	Known RBP	11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	TBC1D8B	Q0IIM8	1120 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	TMEM266	Q2M3C6	531 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	TMEM119	Q4V9L6	283 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	EFCAB12	Q6NXP0	572 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	TSHZ1	Q6ZSZ6	1077 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	OTOP2	Q7RTS6	562 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	TRMT1L	Q7Z2T5	733 aa	Known RBP	11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	KCNK18	Q7Z418	384 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	RSPH3	Q86UC2	560 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	TPH2	Q8IWU9	490 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	LRCH3	Q96II8	777 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	TMX1	Q9H3N1	280 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	ERVK-5	Q9HDB9	667 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	LRWD1	Q9UFC0	647 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	PTPRS	Q13332	1948 aa		11.31	□□□□□ -0.6
CALCOCO1-222	ENST00000553154		A0A087WWV3	80 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	ABHD14A-ACY1	A0A1B0GW23	586 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	VTN	P04004	478 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	CDC25A	P30304	524 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	CRYBB1	P53674	252 aa	Predicted RBP	11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	DEFB103A	P81534	67 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	TMEM62	Q0P6H9	643 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	GRB10	Q13322	594 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	EMC2	Q15006	297 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	IER5	Q5VY09	327 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	HAUS3	Q68CZ6	603 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	GPR153	Q6NV75	609 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	DTHD1	Q6ZMT9	781 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	ZNF710	Q8N1W2	664 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	USP38	Q8NB14	1042 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	PIGO	Q8TEQ8	1089 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	CEP170P1	Q96L14	293 aa		11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	NOC2L	Q9Y3T9	749 aa	Known RBP	11.3	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	VWA3A	A6NCI4	1184 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	GRXCR1	A8MXD5	290 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	SLC26A4	O43511	780 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	GAS2	O43903	313 aa	Known RBP	11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	DARS	P14868	501 aa	Known RBP	11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	CD52	P31358	61 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	ARL2	P36404	184 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	DSC3	Q14574	896 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	SLC39A14	Q15043	492 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	KIZ	Q2M2Z5	673 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	XKR9	Q5GH70	373 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	FAM43B	Q6ZT52	329 aa	Predicted RBP	11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	OTUD6A	Q7L8S5	288 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	RTN4RL1	Q86UN2	441 aa	Predicted RBP	11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	FAM228A	Q86W67	206 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	LINC00301	Q8NCQ3	95 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	ERMN	Q8TAM6	284 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	PHOSPHO2	Q8TCD6	241 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	SNX29	Q8TEQ0	813 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	SEPT8	Q92599	483 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	APBB2	Q92870	758 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	AK8	Q96MA6	479 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	NACC1	Q96RE7	527 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	SLC9A7	Q96T83	725 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	IFIH1	Q9BYX4	1025 aa	Known RBP	11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	RC3H2	Q9HBD1	1191 aa	Known RBP	11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	IFT122	Q9HBG6	1241 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	STK24	Q9Y6E0	443 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	MUC3A	Q02505	3323 aa		11.29	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	MYH9	P35579	1960 aa	Known RBP	11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	MGEA5	O60502	916 aa		11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	EFCAB14	O75071	495 aa		11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	DGAT1	O75907	488 aa		11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	ARHGEF15	O94989	841 aa		11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	ACTN1	P12814	892 aa		11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	LONP1	P36776	959 aa	Known RBP	11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	CCT6A	P40227	531 aa	Known RBP	11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	NLRP11	P59045	1033 aa	Known RBP	11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	MAPK7	Q13164	816 aa		11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	USP49	Q70CQ1	688 aa		11.28	□□□□□ -0.6
CALCOCO1-222	ENST00000553154	ZNF410	Q86VK4	478 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms