RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 BCS1LQ9Y276 419 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 DDX3XO00571 662 aaKnown RBP eCLIP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 PPFIA2O75334 1257 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 AP1G2O75843 785 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 LINGO3P0C6S8 592 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 GHRP10912 638 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 POLD1P28340 1107 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 MARCKSL1P49006 195 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 LRRC63Q05C16 580 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ADCY1Q08828 1119 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 MGAT5Q09328 741 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 KCNA1Q09470 495 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 MPP2Q14168 576 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ZNF268Q14587 947 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ASIC2Q16515 512 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 MIS18BP1Q6P0N0 1132 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 PEX26Q7Z412 305 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 CNBD1Q8NA66 436 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 C3orf20Q8ND61 904 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 MICAL1Q8TDZ2 1067 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 SPIRE2Q8WWL2 714 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ALG3Q92685 438 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 RAD54LQ92698 747 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 COA7Q96BR5 231 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 CALML4Q96GE6 196 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 RMDN2Q96LZ7 410 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 PIGSQ96S52 555 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 FMO2Q99518 471 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 CUEDC2Q9H467 287 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 FGFR1OP2Q9NVK5 253 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 TAS2R14Q9NYV8 317 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 TMOD4Q9NZQ9 345 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 CTNNAL1Q9UBT7 734 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 PCDHA2Q9Y5H9 948 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 AFF2P51816 1311 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 TCRBV7S2A1N4TA0A589 114 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 PALM3A6NDB9 673 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 SMNDC1O75940 238 aaKnown RBP eCLIP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 UCHL3P15374 230 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 NQO1P15559 274 aaKnown RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ABCB4P21439 1286 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 HOXD13P35453 343 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 FKBP3Q00688 224 aaKnown RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 NONOQ15233 471 aaKnown RBP eCLIP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 DUPD1Q68J44 220 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 CLEC10AQ8IUN9 316 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 MYOCDQ8IZQ8 938 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 FITM2Q8N6M3 262 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 DAGLBQ8NCG7 672 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 SNX29Q8TEQ0 813 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 UTP4Q969X6 686 aaKnown RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 HOOK2Q96ED9 719 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 AK8Q96MA6 479 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 EYA3Q99504 573 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 POP1Q99575 1024 aaKnown RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 YIPF3Q9GZM5 350 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 CCDC113Q9H0I3 377 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 KCTD10Q9H3F6 313 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ECT2Q9H8V3 914 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 PIDD1Q9HB75 910 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 LDHCP07864 332 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 GM2AP17900 193 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 PON1P27169 355 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 CASP4P49662 377 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 AMPD3Q01432 767 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 TNIP1Q15025 636 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 CALCRLQ16602 461 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 UBE2SQ16763 222 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 MFSD14BQ5SR56 506 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 CGB2Q6NT52 195 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 CCDC50Q8IVM0 306 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 RASGEF1CQ8N431 466 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 SPDYE1Q8NFV5 336 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 SYN2Q92777 582 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 HAS1Q92839 578 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ARHGEF26Q96DR7 871 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 HES6Q96HZ4 224 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 RSRC1Q96IZ7 334 aaKnown RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 SPAG5Q96R06 1193 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 LBHD1Q9BQE6 289 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 NYXQ9GZU5 481 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ANKRD2Q9GZV1 360 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ZCWPW1Q9H0M4 648 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ZNF287Q9HBT7 754 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 BSDC1Q9NW68 430 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ADAM22Q9P0K1 906 aa5.27□□□□□ -1.57
LIMA1-214ENST00000552783 ARPP21Q9UBL0 812 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-214ENST00000552783 DCCP43146 1447 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 CASZ1Q86V15 1759 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 PVALEFA0A1B0GWK0 134 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 DDX3YO15523 660 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 SNX3O60493 162 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 LRRN2O75325 713 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 ALADP13716 330 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 RPL21P46778 160 aaKnown RBP5.26□□□□□ -1.57
LIMA1-214ENST00000552783 GNAQP50148 359 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 PMS2P54278 862 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 GALCP54803 685 aa5.26□□□□□ -1.57
LIMA1-214ENST00000552783 SLC8A3P57103 927 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms