RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	HMMR	O75330	724 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	SASH1	O94885	1247 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	MT-CO1	P00395	513 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	IGHD	P01880	384 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	GLUL	P15104	373 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	HOXA5	P20719	270 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	HOXC13	P31276	330 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	PIK3CA	P42336	1068 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	NMI	Q13287	307 aa	Predicted RBP	4.92	□□□□□ -1.62
USP44-208	ENST00000552440	GLIPR1L2	Q4G1C9	344 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	VPS53	Q5VIR6	699 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	FAAH2	Q6GMR7	532 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	ADAT2	Q7Z6V5	191 aa	Known RBP	4.92	□□□□□ -1.62
USP44-208	ENST00000552440	CATIP	Q7Z7H3	387 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	TBC1D1	Q86TI0	1168 aa	Predicted RBP	4.92	□□□□□ -1.62
USP44-208	ENST00000552440	ZBTB10	Q96DT7	871 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	HSPBAP1	Q96EW2	488 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	SIGLEC10	Q96LC7	697 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	CXorf56	Q9H5V9	222 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	NMRK2	Q9NPI5	230 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	TBC1D22B	Q9NU19	505 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	WHRN	Q9P202	907 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	GJD2	Q9UKL4	321 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440	EMC9	Q9Y3B6	208 aa		4.92	□□□□□ -1.62
USP44-208	ENST00000552440		M0R3H8	397 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	NCAM2	O15394	837 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	OPA1	O60313	960 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	EFCAB14	O75071	495 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	PPM1B	O75688	479 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	BAIAP3	O94812	1187 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	ASL	P04424	464 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	CD247	P20963	164 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	ARL4A	P40617	200 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	UBA7	P41226	1012 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	RAD52	P43351	418 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	GABRE	P78334	506 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	MPP1	Q00013	466 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	PFKP	Q01813	784 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	PCBP2	Q15366	365 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
USP44-208	ENST00000552440	KIAA1614	Q5VZ46	1190 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	IQSEC1	Q6DN90	963 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	TLDC1	Q6P9B6	456 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	GALNT5	Q7Z7M9	940 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	TRIM59	Q8IWR1	403 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	CMTR2	Q8IYT2	770 aa	Known RBP	4.91	□□□□□ -1.62
USP44-208	ENST00000552440	OR2W6P	Q8NHA6	318 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	SCLY	Q96I15	445 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	RCC1L	Q96I51	464 aa	Known RBP	4.91	□□□□□ -1.62
USP44-208	ENST00000552440	CCDC138	Q96M89	665 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	PRKRIP1	Q9H875	184 aa	Predicted RBP	4.91	□□□□□ -1.62
USP44-208	ENST00000552440	KCNK12	Q9HB15	430 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	AGO4	Q9HCK5	861 aa	Known RBP	4.91	□□□□□ -1.62
USP44-208	ENST00000552440	DNM3	Q9UQ16	869 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	IRAK3	Q9Y616	596 aa		4.91	□□□□□ -1.62
USP44-208	ENST00000552440	MYOCOS	A0A1B0GUC4	107 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	NOP56	O00567	594 aa	Known RBP	4.9	□□□□□ -1.62
USP44-208	ENST00000552440	TOR1B	O14657	336 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	TPP1	O14773	563 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	JMJD7	P0C870	316 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	PNLIP	P16233	465 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	HSPA6	P17066	643 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	RPL10	P27635	214 aa	Known RBP	4.9	□□□□□ -1.62
USP44-208	ENST00000552440	ERVK-21	P61565	698 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	G3BP1	Q13283	466 aa	Known RBP eCLIP	4.9	□□□□□ -1.62
USP44-208	ENST00000552440	LAPTM5	Q13571	262 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	NBPF12	Q5TAG4	269 aa	Predicted RBP	4.9	□□□□□ -1.62
USP44-208	ENST00000552440	SPATA1	Q5VX52	437 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	LMBRD2	Q68DH5	695 aa	Predicted RBP	4.9	□□□□□ -1.62
USP44-208	ENST00000552440	RETSAT	Q6NUM9	610 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	SWSAP1	Q6NVH7	229 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	B3GNT9	Q6UX72	402 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	RPAIN	Q86UA6	219 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	NLRX1	Q86UT6	975 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	ARHGEF39	Q8N4T4	335 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	LINC00116	Q8NCU8	138 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	NSUN6	Q8TEA1	469 aa	Known RBP	4.9	□□□□□ -1.62
USP44-208	ENST00000552440	BTN2A2	Q8WVV5	523 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	KRTAP4-11	Q9BYQ6	195 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	WDR12	Q9GZL7	423 aa	Known RBP	4.9	□□□□□ -1.62
USP44-208	ENST00000552440	MKRN2	Q9H000	416 aa	Known RBP	4.9	□□□□□ -1.62
USP44-208	ENST00000552440	MYLK2	Q9H1R3	596 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	ARHGAP28	Q9P2N2	729 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	TNFRSF10D	Q9UBN6	386 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	AKT3	Q9Y243	479 aa		4.9	□□□□□ -1.62
USP44-208	ENST00000552440	MAGED1	Q9Y5V3	778 aa	Predicted RBP	4.9	□□□□□ -1.62
USP44-208	ENST00000552440	GTPBP10	A4D1E9	387 aa	Known RBP	4.9	□□□□□ -1.63
USP44-208	ENST00000552440	BLACE	A4D250	179 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	TRIM75P	A6NK02	468 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440		A6NNZ2	444 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440		M0R2C6	588 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	LRRN2	O75325	713 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	GFPT2	O94808	682 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	CP	P00450	1065 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	CD4	P01730	458 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	PYGL	P06737	847 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	BMP7	P18075	431 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	VCAM1	P19320	739 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	PSMA3	P25788	255 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	PPFIA1	Q13136	1202 aa		4.9	□□□□□ -1.63
USP44-208	ENST00000552440	AUH	Q13825	339 aa	Known RBP	4.9	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms