RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 LDLRAD3Q86YD5 345 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 RELL1Q8IUW5 271 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 MTA3Q9BTC8 594 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 L2HGDHQ9H9P8 463 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 BRMS1Q9HCU9 246 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 HACL1Q9UJ83 578 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 BCORQ6W2J9 1755 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 KRTAP29-1A8MX34 341 aaPredicted RBP3.24□□□□□ -1.89
PTCH1-223ENST00000551623 MINDY4BA8MYZ0 360 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 ERVV-2B6SEH9 535 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 FZD9O00144 591 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 TNFRSF10CO14798 259 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 PPP1R11O60927 126 aaPredicted RBP3.24□□□□□ -1.89
PTCH1-223ENST00000551623 CD3EP07766 207 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 NME1P15531 152 aaKnown RBP3.24□□□□□ -1.89
PTCH1-223ENST00000551623 DGCR2P98153 550 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 ADAM9Q13443 819 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 CYP4F22Q6NT55 531 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 FBXL19Q6PCT2 694 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 ERMP1Q7Z2K6 904 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 CTU1Q7Z7A3 348 aaKnown RBP3.24□□□□□ -1.89
PTCH1-223ENST00000551623 CCDC144CPQ8IYA2 1237 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 GPC2Q8N158 579 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 AGAP2Q99490 1192 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 RSRP1Q9BUV0 290 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 TAOK3Q9H2K8 898 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 KCNQ5Q9NR82 932 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 KBTBD4Q9NVX7 518 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 TMOD3Q9NYL9 352 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 GULP1Q9UBP9 304 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 PGAP2Q9UHJ9 254 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 ABT1Q9ULW3 272 aaKnown RBP3.24□□□□□ -1.89
PTCH1-223ENST00000551623 ANKRD26Q9UPS8 1709 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 FLT4P35916 1363 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 CARMIL3Q8ND23 1372 aa3.24□□□□□ -1.89
PTCH1-223ENST00000551623 RANBP2P49792 3224 aaKnown RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 SOS1Q07889 1333 aaPredicted RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 ARFGEF2Q9Y6D5 1785 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 HTTP42858 3142 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 KLRG2A4D1S0 409 aaPredicted RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 C9IYK1 514 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 H0YIN7 160 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 FOXS1O43638 330 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 GREM1O60565 184 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 NTRK1P04629 796 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 COL11A2P13942 1736 aaPredicted RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 PHKG2P15735 406 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 IL13P35225 146 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 CRKLP46109 303 aaKnown RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 ZNF445P59923 1031 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 TJP1Q07157 1748 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 NOL9Q5SY16 702 aaKnown RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 LDLRAD1Q5T700 205 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 STYK1Q6J9G0 422 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 USP50Q70EL3 339 aaPredicted RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 DCP2Q8IU60 420 aaKnown RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 KLHL36Q8N4N3 616 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 FIBCD1Q8N539 461 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 EXTL1Q92935 676 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 BRF1Q92994 677 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 BRIP1Q9BX63 1249 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 LRRC3Q9BY71 257 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 EHMT1Q9H9B1 1298 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 SUCOQ9UBS9 1254 aaKnown RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 SRP68Q9UHB9 627 aaKnown RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 MYH14Q7Z406 1995 aaKnown RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 RGPD2P0DJD1 1756 aa3.23□□□□□ -1.89
PTCH1-223ENST00000551623 RBBP6Q7Z6E9 1792 aaKnown RBP3.23□□□□□ -1.89
PTCH1-223ENST00000551623 RNF123Q5XPI4 1314 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 CDHR2Q9BYE9 1310 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 ZNF541Q9H0D2 1346 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 AFDNP55196 1824 aaKnown RBP3.22□□□□□ -1.89
PTCH1-223ENST00000551623 SRGNP10124 158 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 KRTAP10-11P60412 298 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 NFATC3Q12968 1075 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 PWP1Q13610 501 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 EEF1DP3Q658K8 133 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 RCSD1Q6JBY9 416 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 TCTN3Q6NUS6 607 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 MRGPRGQ86SM5 289 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 C2CD5Q86YS7 1000 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.22□□□□□ -1.89
PTCH1-223ENST00000551623 SLC17A8Q8NDX2 589 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 EDAQ92838 391 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 GNRHR2Q96P88 292 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 PRO3102Q9H379 93 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 GP6Q9HCN6 339 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 TERF2IPQ9NYB0 399 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.22□□□□□ -1.89
PTCH1-223ENST00000551623 ADAMTS1Q9UHI8 967 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 NARFQ9UHQ1 456 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 SF3B6Q9Y3B4 125 aaKnown RBP3.22□□□□□ -1.89
PTCH1-223ENST00000551623 DMRT1Q9Y5R6 373 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 FHOD1Q9Y613 1164 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 MKI67P46013 3256 aaKnown RBP3.22□□□□□ -1.89
PTCH1-223ENST00000551623 ANKRD31Q8N7Z5 1873 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 SZT2Q5T011 3432 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 MRC1P22897 1456 aa3.22□□□□□ -1.89
PTCH1-223ENST00000551623 COL4A5P29400 1685 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 SCN7AQ01118 1682 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms