RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 IGDCC3Q8IVU1 814 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 AMOTL1Q8IY63 956 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 CHPFQ8IZ52 775 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 Q8N3U1 123 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 SMARCC2Q8TAQ2 1214 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 MZB1Q8WU39 189 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 TGFBRAP1Q8WUH2 860 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 TSR2Q969E8 191 aaKnown RBP6.5□□□□□ -1.37
LIMA1-205ENST00000550592 EAF2Q96CJ1 260 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-205ENST00000550592 BTBD2Q9BX70 525 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 RHOBTB2Q9BYZ6 727 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 TMPRSS11EQ9UL52 423 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 FAN1Q9Y2M0 1017 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 LUC7L2Q9Y383 392 aaKnown RBP6.5□□□□□ -1.37
LIMA1-205ENST00000550592 SMARCA2P51531 1590 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 SEMA7AO75326 666 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 SCGB1D2O95969 90 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 CLEC2LP0C7M8 214 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 MTNR1BP49286 362 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 ODF1Q14990 250 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 STILQ15468 1287 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 PITRM1Q5JRX3 1037 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 TMEM240Q5SV17 173 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 PRAMEF9Q5VWM5 478 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 CCDC62Q6P9F0 684 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 UNQ6494/PRO21346Q6UXR6 183 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 TTLL7Q6ZT98 887 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 KCNK18Q7Z418 384 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 PNMA8AQ86V59 439 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-205ENST00000550592 LYSMD2Q8IV50 215 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 CPA6Q8N4T0 437 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 SSH1Q8WYL5 1049 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 RAX2Q96IS3 184 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 SYT3Q9BQG1 590 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 KCNK12Q9HB15 430 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 LUC7LQ9NQ29 371 aaKnown RBP6.49□□□□□ -1.37
LIMA1-205ENST00000550592 ZNF277Q9NRM2 450 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-205ENST00000550592 DNAJC28Q9NX36 388 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 ZNF180Q9UJW8 692 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 DENND2AQ9ULE3 1009 aa6.49□□□□□ -1.37
LIMA1-205ENST00000550592 N4BP3O15049 544 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 MAFO75444 373 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-205ENST00000550592 APOL3O95236 402 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 ITGA1P56199 1179 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 BCAR1P56945 870 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 MRPS9P82933 396 aaKnown RBP6.48□□□□□ -1.37
LIMA1-205ENST00000550592 ADAM9Q13443 819 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.48□□□□□ -1.37
LIMA1-205ENST00000550592 TMEM132EQ6IEE7 984 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 LINC00482Q8N8I6 264 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 RSAD2Q8WXG1 361 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 JPH3Q8WXH2 748 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-205ENST00000550592 FERMT2Q96AC1 680 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 C8orf48Q96LL4 319 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 GORASP1Q9BQQ3 440 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 OR10A5Q9H207 317 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 GCM1Q9NP62 436 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 GEMIN8Q9NWZ8 242 aaKnown RBP6.48□□□□□ -1.37
LIMA1-205ENST00000550592 ARHGAP20Q9P2F6 1191 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 IP6K2Q9UHH9 426 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 ANKRD6Q9Y2G4 727 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 PDS5BQ9NTI5 1447 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 MYPNQ86TC9 1320 aa6.48□□□□□ -1.37
LIMA1-205ENST00000550592 IL18BPO95998 194 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 PFKMP08237 780 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 MTHFD2P13995 350 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 AGXTP21549 392 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 APEX1P27695 318 aaKnown RBP6.47□□□□□ -1.37
LIMA1-205ENST00000550592 FOXO4P98177 505 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 SRSF2Q01130 221 aaKnown RBP6.47□□□□□ -1.37
LIMA1-205ENST00000550592 NOLC1Q14978 699 aaKnown RBP eCLIP6.47□□□□□ -1.37
LIMA1-205ENST00000550592 MLANAQ16655 118 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 TOR2AQ5JU69 321 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 FAM102BQ5T8I3 360 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 NXNQ6DKJ4 435 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 DPP8Q6V1X1 898 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-205ENST00000550592 NOL8Q76FK4 1167 aaKnown RBP6.47□□□□□ -1.37
LIMA1-205ENST00000550592 CXXC5Q7LFL8 322 aaKnown RBP6.47□□□□□ -1.37
LIMA1-205ENST00000550592 SLC41A1Q8IVJ1 513 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 CMTR2Q8IYT2 770 aaKnown RBP6.47□□□□□ -1.37
LIMA1-205ENST00000550592 JADE3Q92613 823 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 RPGRQ92834 1020 aaKnown RBP6.47□□□□□ -1.37
LIMA1-205ENST00000550592 C11orf84Q9BUA3 381 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-205ENST00000550592 SGPP1Q9BX95 441 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 PITHD1Q9GZP4 211 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-205ENST00000550592 PRDM12Q9H4Q4 367 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 GIT1Q9Y2X7 761 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 GPR45Q9Y5Y3 372 aa6.47□□□□□ -1.37
LIMA1-205ENST00000550592 A0A0A6YYJ9 748 aa6.46□□□□□ -1.38
LIMA1-205ENST00000550592 ST20-MTHFSA0A0A6YYL1 179 aa6.46□□□□□ -1.38
LIMA1-205ENST00000550592 LRRC10BA6NIK2 292 aa6.46□□□□□ -1.38
LIMA1-205ENST00000550592 MAFGO15525 162 aa6.46□□□□□ -1.38
LIMA1-205ENST00000550592 XPOTO43592 962 aaKnown RBP6.46□□□□□ -1.38
LIMA1-205ENST00000550592 LPLP06858 475 aa6.46□□□□□ -1.38
LIMA1-205ENST00000550592 EPHB3P54753 998 aa6.46□□□□□ -1.38
LIMA1-205ENST00000550592 IL13RA1P78552 427 aa6.46□□□□□ -1.38
LIMA1-205ENST00000550592 NFATC3Q12968 1075 aa6.46□□□□□ -1.38
LIMA1-205ENST00000550592 RTP5Q14D33 572 aa6.46□□□□□ -1.38
LIMA1-205ENST00000550592 CLUL1Q15846 466 aa6.46□□□□□ -1.38
LIMA1-205ENST00000550592 EFCAB2Q5VUJ9 269 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms